SOUP: Stochastic Ordering Using Permutations (and Pairwise Comparisons)

Construct a ranking of a set of treatments/groups by gathering together information coming from several response variables. It can be used with both balanced and unbalanced experiments (with almost all test statistics) as well as in presence of either continuous covariates or a stratifying (categorical) variable.

Author
Federico Mattiello [aut, cre]
Date of publication
2015-04-04 16:14:05
Maintainer
Federico Mattiello <federico.mattiello@gmail.com>
License
GPL (>= 2)
Version
1.1

View on CRAN

Man pages

BHS
Multiplicity adjustment by Bonferroni-Holm-Shaffer's rule
DesM
Design Matrix For Pairwise Differences
dummyze
From Factor To Dummy Variables
FWEminP
FWE Adjustment Using Permutation
initialize-methods
Methods for function 'initialize' in package 'SOUP':...
iterNPC
Iterated NonParametric Combination
makePermSpaceID
Constructs Row Indices Permutation Space
makePValueMat
Construct Univariate _p_-Values Matrix
NPC
NonParametric Combination of Test Statistic
orthoX
Residualises the response variables _w.r.t._ the matrix of...
PermSpace-class
Class 'PermSpace'
print-methods
'signature(x = "PermSpace")' It prints the whole object on...
PValueMat-class
Class 'PValueMat'
rankingRule
Performs the ranking
RankResults-class
Ranking Results
RankResults-method
Methods for function 'as.list' in package 'SOUP'
show-methods
'signature(object = "PermSpace")' Shows only the main...
SOUP
SOUP Main Function
SoupObject-class
Class 'SoupObject'
t2p
From Test Statistics To _p_-Values

Files in this package

SOUP
SOUP/NAMESPACE
SOUP/R
SOUP/R/multiplicity.R
SOUP/R/PValueMat.R
SOUP/R/simpleMeanDiff.R
SOUP/R/iterNPC.r
SOUP/R/strataMeanDiff.R
SOUP/R/SoupObject.R
SOUP/R/utilities.R
SOUP/R/RankResults.R
SOUP/R/simpleAD.R
SOUP/R/t2p.R
SOUP/R/simpleHotelling.R
SOUP/R/strataTtest.R
SOUP/R/NPC.R
SOUP/R/PermSpace.R
SOUP/R/strataAD.R
SOUP/R/SOUP.R
SOUP/R/rankingRule.R
SOUP/R/strataLmCoef.R
SOUP/R/simpleTtest.R
SOUP/MD5
SOUP/DESCRIPTION
SOUP/man
SOUP/man/FWEminP.Rd
SOUP/man/makePermSpaceID.Rd
SOUP/man/rankingRule.Rd
SOUP/man/dummyze.Rd
SOUP/man/t2p.Rd
SOUP/man/initialize-methods.Rd
SOUP/man/BHS.Rd
SOUP/man/PValueMat-class.Rd
SOUP/man/RankResults-class.Rd
SOUP/man/RankResults-method.Rd
SOUP/man/PermSpace-class.Rd
SOUP/man/makePValueMat.Rd
SOUP/man/iterNPC.Rd
SOUP/man/print-methods.Rd
SOUP/man/DesM.Rd
SOUP/man/SOUP.Rd
SOUP/man/SoupObject-class.Rd
SOUP/man/NPC.Rd
SOUP/man/orthoX.Rd
SOUP/man/show-methods.Rd