Description Details Objects from the Class Slots Methods Author(s) Examples
Permutation Space
Methods for function plot
in package SOUP
Contains the permutation space of the test statistic, useful for reproducibility of the analyses
Objects can be created by calls of the form
new("PermSpace", ...)
. It contains information of
permutation spaces used in the analysis, the combined
test statistics and p-values, IDs
(row
indexes) and the seed
for the RNG
, the
rawStats
(non-combined test statistics) and
comb.funct
(the nonparametric combining function).
But objects of the class are principally supposed to be
created and used internally for storing results of
SOUP
.
seed
:integer
seed for
the Random Number Generator
T.H0Low
:matrix
containing the permutation space of
combined test statistics with null hypothesis
H_0: x_i <= x_h, i < h,
i,h = 1,…,G
T.H0Gre
:matrix
containing the permutation space of
combined test statistics with null hypothesis
H_0: x_i <= x_h, i < h,
i,h = 1,…,G
P.H0Low
:matrix
containing the permutation space of
combined p-values with null hypothesis
H_0: x_i <= x_h, i < h,
i,h = 1,…,G
P.H0Gre
:matrix
containing the permutation space of
combined p-values with null hypothesis
H_0: x_i <= x_h, i < h,
i,h = 1,…,G
IDs
:matrix
permutation space of row indexes
rawStats
:3-way array
containing the permutation space of non-combined
test statistics
comb.funct
: nonparametric
combining function used for NPC
of
rawStats
constructor used when
calling new(PermSpace, ...)
signature(object = "PermSpace")
: shows only the
main information (on screen) for the object
signature(x = "PermSpace")
: It
prints the whole object on screen (mostly useful for
external saving)
signature(x =
"PermSpace")
Plots a bivariate representation of the permutation space, when there are more than 2 (original) variables then a Principal Component Analysis is performed and the first 2 variables in the transformed space are shown
Federico Mattiello <federico.mattiello@gmail.com>
1 | showClass("PermSpace")
|
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