spodt.tree: Spatial Classification Tree

In SPODT: Spatial Oblique Decision Tree

Description

This graphical function provides the tree issued from the spodt function.

Usage

spodt.tree(object)

Arguments

object

object is an object of class spodt, usually, a result of a call to spodt.

Value

Each step of the classification are presented with main statistics. For graphical convenience, grafted classes are not presented but only indicated by class id number.

Author(s)

Jean Gaudart, Nathalie Graffeo, Guillaume Barbet, Bernard Fichet, Roch Giorgi (Aix-Marseille University)

References

• Gaudart J, Graffeo N, Coulibaly D, Barbet G, Rebaudet S, Dessay N, Doumbo O, Giorgi R. SPODT: An R Package to Perform Spatial Partitioning. Journal of Statistical Software 2015;63(16):1-23. http://www.jstatsoft.org/v63/i16/

• Gaudart J, Poudiougou B, Ranque S, Doumbo O. Oblique decision trees for spatial pattern detection: optimal algorithm and application to malaria risk. BMC Medical Research Methodology 2005;5:22

• Gaudart J, Giorgi R, Poudiougou B, Toure O, Ranque S, Doumbo O, Demongeot J. Detection de clusters spatiaux sans point source predefini: utilisation de cinq methodes et comparaison de leurs resultats. Revue d'Epidemiologie et de Sante Publique 2007;55(4):297-306

• Fichet B, Gaudart J, Giusiano B. Bivariate CART with oblique regression trees. International conference of Data Science and Classification, International Federation of Classification Societies, Ljubljana, Slovenia, July 2006.

See Also

spodt, spodtSpatialLines, test.spodt

Examples

data(dataMALARIA)
#Example : number of malaria episodes per child at each household,
          #from November to December 2009, Bandiagara, Mali.
#Copyright: Pr Ogobara Doumbo, MRTC, Bamako, Mali. email: okd[at]icermali.org
coordinates(dataMALARIA)<-c("x","y")
class(dataMALARIA)
proj4string(dataMALARIA)<-"+proj=longlat +datum=WGS84 +ellps=WGS84"
dataMALARIA<-spTransform(dataMALARIA, CRS("+proj=merc +datum=WGS84 +ellps=WGS84"))

gr<-0.07   #graft parameter
rtw<-0.01 #rtwo.min
parm<-25  #min.parent
childm<-2 #min.child
lmx<-7 

sp<-spodt(dataMALARIA@data[,2]~1, dataMALARIA, weight=TRUE, graft=gr, min.ch=childm,
          min.parent=parm, level.max=lmx, rtwo.min=rtw)
spodt.tree(sp)

SPODT documentation built on May 2, 2019, 9:43 a.m.