Man pages for SSHAARP
Searching Shared HLA Amino Acid Residue Prevalence
| checkAlleleSyntax | Check allele syntax |
| checkHaplotypeSyntax | Check haplotype syntax |
| checkLocusDataset | Check locus validity and if the locus is present in the user... |
| checkMotifSyntax | Check motif syntax |
| checkPosition | Checks if amino acid positions in motif exist |
| dataSubset | Dataset manipulation for motifs and alleles |
| dataSubsetHaplo | Dataset manipulation for haplotypes |
| findMotif | Returns an alignment data frame of alleles that share a... |
| getVariantInfo | Locus and allele or motif extraction for motifs, allele, or... |
| isNamePresent | Checks if name portion of entered variant is present |
| mock_haplotype_dataset | Mock Haplotype Dataset |
| PALM | Population Allele Locating Mapmaker |
| readFilename | Designates dataset by either reading in file the user has... |
| solberg_dataset | Solberg Dataset |
| validateVariantType | validateVariantType |
| verifyAlleleANHIG | Verifies the allele entered is present in the IMGT protein... |
| verifyAlleleANHIGHaplo | Verifies the alleles in entered haplotype are present in... |
| verifyAlleleDataset | Verifies the allele entered is present in specified dataset |
