getVariantInfo: Locus and allele or motif extraction for motifs, allele, or...

In SSHAARP: Searching Shared HLA Amino Acid Residue Prevalence

Locus and allele or motif extraction for motifs, allele, or haplotype mapping

Description

Extracts locus and allele or motif information from variant for alleles or motifs

Usage

getVariantInfo(variant)

Arguments

variant

An amino acid motif or allele. Amino acid motifs must be in the following format: Locus*##$~##$~##$, where ## identifies a peptide position, and $ identifies an amino acid residue. Alleles must have 1-4 fields.

Value

A list object with loci and allele or motif information.

Note

For internal SSHAARP use only.

SSHAARP documentation built on June 18, 2025, 1:08 a.m.