normalize_spatial: Normalize spatial coordinates

In STDistance: Spatial Transcriptomics Distance Calculation and Visualization

Normalize spatial coordinates

Description

Normalize spatial coordinates

Usage

normalize_spatial(
  data,
  sample_col = "Sample",
  x_col = "pxl_row_in_fullres",
  y_col = "pxl_col_in_fullres",
  min_value = 1,
  max_value = 10000
)

Arguments

data	A data frame containing spatial coordinates
sample_col	Column name specifying sample IDs
x_col	Column name for x-coordinates
y_col	Column name for y-coordinates
min_value	Minimum value for normalization range
max_value	Maximum value for normalization range

Value

A data frame with normalized coordinates

Examples

tissue_posi_normalized<-normalize_spatial(tissue_posi)

STDistance documentation built on June 18, 2025, 5:08 p.m.