posi: posi

In STDistance: Spatial Transcriptomics Distance Calculation and Visualization

posi

Description

Merged spatial location and metadata information.

Usage

data("posi")

Format

A data frame with 293 observations on the following 18 variables.

Newbarcode

a character vector

barcode

a character vector

in_tissue

a numeric vector

array_row

a numeric vector

array_col

a numeric vector

pxl_row_in_fullres

a numeric vector

pxl_col_in_fullres

a numeric vector

Sample

a character vector

Sampleid

a numeric vector

orig.ident

a character vector

nCount_Spatial

a numeric vector

nFeature_Spatial

a numeric vector

nCount_SCT

a numeric vector

nFeature_SCT

a numeric vector

integrated_snn_res.0.8

a numeric vector

seurat_clusters

a numeric vector

celltype_ABCDepi

a character vector

gen2_SPLIz_numeric

a numeric vector

Details

Merged spatial location and metadata information.

Source

This study.

References

Wang, Z., Yang, L., Yang, S., Li, G., Xu, M., Kong, B., Shao, C., & Liu, Z. (2025). Isoform switch of CD47 provokes macrophage-mediated pyroptosis in ovarian cancer. bioRxiv, 2025.2004.2017.649282. https://doi.org/10.1101/2025.04.17.649282

Examples

data(posi)
## maybe str(posi) ; plot(posi) ...

STDistance documentation built on June 18, 2025, 5:08 p.m.