R/dsb_map.R

In STRAH: Short Tandem Repeats Analysis of Hotspot Zones

#' Data of the DsbMap for humans
#'
#' A dataset containing the PRDM9-A type hotspots of Pratto et al. 2014.
#' @docType data
#' @usage data (dsb_map)
#' @format The data set contains 37527 rows and 27 columns. We provide information on the most important columns (column nr, column name) hereafter:
#' \describe{
#' \item{1, chrom}{The chromosome under study}
#' \item{2, start}{Start coordinates of the hotspot}
#' \item{3, end}{End coordinates of the hotspot}
#' \item{4-8, (AA1,AA2,AB1,AB2,AC)_strength}{Strength of the corresponding PRDM9-type hotspot. }
#' \item{9-15, (AA1,AA2,AB1,AB2,AC)_hotspots}{Dummy coding whether these positions (start/end) define a hotspot of given PRDM9-type}
#' }
#' @references Heissl, A., et al. (2018) Length asymmetry and heterozygosity strongly influences the evolution of poly-A microsatellites at meiotic recombination hotspots. doi: https://doi.org/10.1101/431841
#'
#' Pratto, F., et al. (2014). Recombination initiation maps of individual human genomes. Science, 346(6211).
#'
#' @seealso \code{\link{STR_analysis}}, \code{\link{STR_detection}}
#' @name dsb_map
#' @keywords datasets
NULL