R/dsb_map_chimp_full.R

In STRAH: Short Tandem Repeats Analysis of Hotspot Zones

#' Data of the DsbMap for chimpanzees
#'
#' A dataset containing all translated PRDM9-A type hotspots of Pratto et al. (2014) for chimpanzees.
#' The translation was performed using liftOver of the UCSC Genome Browser from the human genome (hg19) to the chimpanzees genome (panTro5).
#' @docType data
#' @usage data (dsb_map_chimp_full)
#' @format The data set contains 64078 rows and 3 columns. We provide information on the columns (column nr, column name) hereafter:
#' \describe{
#' \item{1, chrom}{The chromosome under study}
#' \item{2, start}{Start coordinates of the hotspot}
#' \item{3, end}{End coordinates of the hotspot}
#' }
#' @references Heissl, A., et al. (2018) Length asymmetry and heterozygosity strongly influences the evolution of poly-A microsatellites at meiotic recombination hotspots. doi: https://doi.org/10.1101/431841
#'
#' Pratto, F., et al. (2014). Recombination initiation maps of individual human genomes. Science, 346(6211).
#'
#' Kuhn RM, et al. (2013) The UCSC genome browser and associated tools, Brief. Bioinform., 14, 144-161.
#'
#' @seealso \code{\link{STR_analysis}}, \code{\link{STR_detection}}
#' @name dsb_map_chimp_full
#' @keywords datasets
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