API for STRMPS
Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

Global functions
BLMM Man page Source code
STRMPSWorkflow Man page Source code
STRMPSWorkflowBatch Man page Source code
STRMPSWorkflowCollectStutters Man page Source code
ShortReadQ.identifySTRRegions Source code
aggregateQuality Source code
appendExtractLists Source code
baseErrorProbabilityConditinal Source code
baseErrorProbabilityMarginal Source code
character.identifySTRRegions Source code
combineMarkerIdentifiedReadsLists Source code
createRanking Source code
cyclicRotation Source code
dentifyFlankingRegions Source code
extractAndTrimMarkerIdentifiedReads.mclapply Source code
extractAndTrimMarkerIdentifiedReadsReverseComplement Source code
extractedReadsList-class Man page
extractedReadsList.stringCoverage Source code
extractedReadsListCombined-class Man page
extractedReadsListNonCombined-class Man page
extractedReadsListReverseComplement-class Man page
findNeighbourStrings Source code
findNeighbours Man page Source code
findNeighbours,stringCoverageGenotypeList-method Man page
findStutter Man page
findStutter,stringCoverageGenotypeList-method Man page
flankingRegions Man page
genotypeIdentifiedList-class Man page
genotypeList Man page
geometricMean Source code
getCols Source code
getGenotype Man page
getGenotype,stringCoverageList-method Man page
identifiedSTRs Man page
identifyNoise Man page
identifyNoise,stringCoverageList-method Man page
identifySTRRegions Man page
identifySTRRegions,ShortReadQ-method Man page
identifySTRRegions,character-method Man page
identifySTRRegions.control Man page Source code
loadRData Source code
mclapplyvmatchPattern Source code
mergeGenotypeStringCoverage Man page
mergeGenotypeStringCoverage,genotypeIdentifiedList-method Man page
mergeNoiseStringCoverage Man page
mergeNoiseStringCoverage,noiseIdentifiedList-method Man page
neighbourList-class Man page
noiseGenotypeIdentified.stringCoverageList.merge Source code
noiseIdentifiedList-class Man page
noiseList Man page
phredQualityProbability Man page Source code
phredQualityScore Man page Source code
sInstalled Source code
sampleQualityCleaning Source code
solexaQualityProbability Man page Man page Source code
solexaQualityScore Man page Man page Source code
stringCoverage Man page
stringCoverage,extractedReadsList-method Man page
stringCoverage,extractedReadsListCombined-method Man page
stringCoverage,extractedReadsListNonCombined-method Man page
stringCoverage,extractedReadsListReverseComplement-method Man page
stringCoverage.control Man page Source code
stringCoverageGenotypeList Man page
stringCoverageGenotypeList-class Man page
stringCoverageList Man page
stringCoverageList-class Man page
stringCoverageList.NoiseGenotype Source code
stringCoverageNoiseList-class Man page
workflow.control Man page Source code
STRMPS documentation built on July 2, 2018, 9:02 a.m.