findNeighbours-stringCoverageGenotypeList-method: Find neighbours

Description Usage Arguments Value

Description

Generic function for finding neighbouring strings, given identified alleles.

Usage

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  ## S4 method for signature 'stringCoverageGenotypeList'
findNeighbours(stringCoverageGenotypeListObject,
  searchDirection = -1, trace = FALSE)

Arguments

stringCoverageGenotypeListObject

A stringCoverageGenotypeList-class object.

searchDirection

The direction to search for neighbouring strings. Default is -1, indicating a search for '-1' stutters.

trace

Should a trace be shown?

Value

A 'neighbourList' with the neighbouring strings, in the specified direction, for the identified allele regions.


STRMPS documentation built on May 2, 2019, 3:35 a.m.