mergeGenotypeStringCoverage-genotypeIdentifiedList-method: Merge genotypeIdentifiedList and stringCoverageList.

In STRMPS: Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

Description

mergeGenotypeStringCoverage merges genotypeIdentifiedList-objects and stringCoverageList-objects.

Usage

  ## S4 method for signature 'genotypeIdentifiedList'
mergeGenotypeStringCoverage(stringCoverageListObject,
  noiseGenotypeIdentifiedListObject)

Arguments

stringCoverageListObject	a stringCoverageList-object, created using the stringCoverage-function.
noiseGenotypeIdentifiedListObject	a noiseGenotypeIdentifiedList-object, created using the getGenotype-function.

Value

Returns a list, with an element for every marker in extractedReadsList-object, each element contains the string coverage of all unique strings of a given marker.

Examples

# Strings aggregated by 'stringCoverage()'
data("stringCoverageList")
# Genotypes identified by 'getGenotype()'
data("genotypeList")
# Noise identified by 'identifyNoise()'
data("noiseList")

mergeGenotypeStringCoverage(stringCoverageList, genotypeList)
mergeNoiseStringCoverage(stringCoverageList, noiseList)

STRMPS documentation built on May 2, 2019, 3:35 a.m.