Man pages for SUMMER
Spatio-Temporal Under-Five Mortality Methods for Estimation

aggregateSurveyAggregate estimators from different surveys.
BRFSSThe BRFSS dataset
ChangeRegionMap region names to a common set.
DemoDataSimulated child mortality person-month dataset.
DemoData2Simulated dataset for prevalence mapping.
DemoMapUganda Admin-1 region map for illustration purpose
DemoMap2Kenya Admin-1 region map for illustration purpose
expitExpit transformation
getAdjustedAdjust direct estimates and their associated variances
getAmatExtract adjacency matrix from the map
getBirthsReformat full birth records into person-month format
getCountsAggregate person-month data into counts and totals by groups.
getDiagExtract posterior summaries of random effects
getDirectObtain the Horvitz-Thompson direct estimates and standard...
getDirectListObtain the Horvitz-Thompson direct estimates and standard...
getSmoothedExtract smoothed estimates.
hatchPlotPlot maps with uncertainty hatching.
iid.newNew random IID models for m-year to period random effects
iid.new.pcNew random IID models for m-year to period random effects
KenDataAuxiliary data for Kenya 2014 DHS.
KingCountyMap of King County
logitLogit transformation
MalawiDataAuxiliary data for Malawi 2000, 2004, 2010, and 2015 DHS.
MalawiMapMalawi Admin-2 map
mapPlotPlot region-level variables on a map
mapPointsMap GPS points to polygon regions
plot.SUMMERprojPlot projection output.
ridgePlotCalculate and plot posterior densities of the projected...
rstSimulate spatial and temporal random effects
rw.newNew random walk 1 and 2 models for m-year to period random...
rw.new.pcNew random walk 1 and 2 models for m-year to period random...
simhyperSimulate hyperpriors from an GMRF
smoothClusterCluster-level space-time smoothing models for mortality rates
smoothDirectSmoothed direct estimates for mortality rates
smoothSurveyFit space-time smoothing models for a generic outcome from...
st.newNew Type I to IV space time interaction models for m-year to...
st.new.pcNew Type I to IV space time interaction models for m-year to...
SUMMER-packageSUMMER package documentation.
tcpPlotDiscrete-color maps based on the True Classification...
SUMMER documentation built on July 10, 2020, 1:11 a.m.