print.SUMMERprojlist: Print method for the combined projection output.

View source: R/summary.R

print.SUMMERprojlistR Documentation

Print method for the combined projection output.

Description

This function is the print method for class SUMMERprojlist.

Usage

## S3 method for class 'SUMMERprojlist'
print(x, ...)

Arguments

x

output from getSmoothed

...

not used

Author(s)

Zehang Li

Examples

## Not run: 
 library(SUMMER)
 library(dplyr)
 data(DemoData)
 # Create dataset of counts
 counts.all <- NULL
 for(i in 1:length(DemoData)){
 counts <- getCounts(DemoData[[i]][, c("clustid", "time", "age", "died",
                                      "region", "strata")],
          variables = 'died', by = c("age", "clustid", "region", 
                                       "time", "strata"))
 counts <- counts %>% mutate(cluster = clustid, years = time, Y=died)
 counts$strata <- gsub(".*\\.","",counts$strata)
 counts$survey <- names(DemoData)[i] 
 counts.all <- rbind(counts.all, counts)
 }
 
 # fit cluster-level model on the periods
 periods <- levels(DemoData[[1]]$time)
 fit <- smoothCluster(data = counts.all, 
    Amat = DemoMap$Amat, 
    time.model = "rw2", 
    st.time.model = "rw1",
    strata.time.effect =  TRUE, 
    survey.effect = TRUE,
    family = "betabinomial",
    year_label = c(periods, "15-19"))
 summary(fit)
 est <- getSmoothed(fit, nsim = 1000)

## End(Not run)

SUMMER documentation built on July 8, 2022, 9:05 a.m.