API for SafeQuant
A Toolbox for the Analysis of Proteomics Data

Global functions
COLORS Man page
addIdQvalues Man page
addScaffoldPTMFAnnotations Man page
barplotMSSignal Man page
createExpDesign Man page
createExpressionDataset Man page
createPairedExpDesign Man page
cvBoxplot Man page
expDesignTagToExpDesign Man page
export Man page
getAAProteinCoordinates Man page
getAllCV Man page
getAllEBayes Man page
getBaselineIntensity Man page
getCV Man page
getExpDesignProgenesisCsv Man page
getGlobalNormFactors Man page
getIBAQEset Man page
getIdLevelQvals Man page
getImpuritiesMatrix Man page
getIntSumPerProtein Man page
getLoocvFoldError Man page
getMaxIndex Man page
getMeanCenteredRange Man page
getModifProteinCoordinates Man page
getMotifX Man page
getNbDetectablePeptides Man page
getNbMisCleavages Man page
getNbPeptidesPerProtein Man page
getNbSpectraPerProtein Man page
getPeptides Man page
getRTNormFactors Man page
getRatios Man page
getScoreCutOff Man page
getSignalPerCondition Man page
getTopX Man page
getUserOptions Man page
globalNormalize Man page
hClustHeatMap Man page
isCon Man page
isDecoy Man page
isStrippedACs Man page
maPlotSQ Man page
missinValueBarplot Man page
option_list Man page
pairsAnnot Man page
parseMaxQuantProteinGroupTxt Man page
parseProgenesisFeatureCsv Man page
parseProgenesisPeptideMeasurementCsv Man page
parseProgenesisProteinCsv Man page
parseScaffoldPTMReport Man page
parseScaffoldRawFile Man page
perFeatureNormalization Man page
plotAbsEstCalibrationCurve Man page
plotAdjustedVsNonAdjustedRatio Man page
plotExpDesign Man page
plotIdScoreVsFDR Man page
plotMSSignalDistributions Man page
plotNbIdentificationsVsRT Man page
plotNbValidDeFeaturesPerFDR Man page
plotPrecMassErrorDistrib Man page
plotPrecMassErrorVsScore Man page
plotQValueVsPValue Man page
plotROC Man page
plotRTNorm Man page
plotRTNormSummary Man page
plotScoreDistrib Man page
plotVolcano Man page
plotXYDensity Man page
purityCorrectTMT Man page
removeOutliers Man page
rollUp Man page
rtNormalize Man page
safeQuantAnalysis Man page
setNbPeptidesPerProtein Man page
setNbSpectraPerProtein Man page
sqNormalize Man page
standardise Man page
stripACs Man page
SafeQuant documentation built on May 2, 2019, 4:53 a.m.