plotNbValidDeFeaturesPerFDR: Plot Total Number of diffrentially Abundant Features...

In SafeQuant: A Toolbox for the Analysis of Proteomics Data

Description

Plot Total Number of diffrentially Abundant Features (applying ratio cutoff) vs. qValue/pValue for all conditions

Usage

plotNbValidDeFeaturesPerFDR(sqa, upRegulated = T, log2RatioCufOff = log2(1),
  pvalCutOff = 1, isLegend = T, isAdjusted = T, ylab = "Nb. Features",
  xlim = NA, ylim = NA, ...)

Arguments

sqa	SafeQuantAnalysis Object
upRegulated	TRUE/FALSE select for upregulated features
log2RatioCufOff	log2 ratio cut-off
pvalCutOff	pValue/qValue cut-off
isLegend	TRUE/FALSE display legend
isAdjusted	TRUE/FALSE qValues/pValue on x-axis
ylab	default Nb. Features
xlim	see plot
ylim	see plot
...	see plot

Details

No details

Note

No note

References

NA

Examples

print("No examples")

Example output

[1] "No examples"

SafeQuant documentation built on May 2, 2019, 4:53 a.m.