plot.compareShiny: Plots Networks for Comparison from Shiny

In SemNeT: Methods and Measures for Semantic Network Analysis

Plots Networks for Comparison from Shiny

Description

Uses qgraph to plot networks. Accepts any number of networks and will organize the plots in the number of side-by-side columns using the heuristic of taking the square root of the number of input and rounding down to the nearest integer (i.e., floor(sqrt(length(input)))). Performs the same operations as compare_nets

Examples

• 3 networks: 1 x 3

• 6 networks: 2 x 3

• 9 networks: 3 x 3

Usage

## S3 method for class 'compareShiny'
plot(x, ...)

Arguments

x	Shiny result resultShiny$comparePlot
...	Additional arguments

Value

Plots networks using qgraph

Author(s)

Alexander Christensen <[e-mail]>

References

Epskamp, S., Cramer, A. O. J., Waldorp, L. J., Schmittmann, V. D., & Borsboom, D. (2012). qgraph: Network visualizations of relationships in psychometric data. Journal of Statistical Software, 48, 1-18.

Jones, P. J. (2019). networktools: Tools for Identifying Important Nodes in Networks. R package version 1.2.1.

Jones, P. J., Mair, P., & McNally, R. (2018). Visualizing psychological networks: A tutorial in R. Frontiers in Psychology, 9, 1742.

Examples

# Simulate Datasets
one <- sim.fluency(10)
two <- sim.fluency(10)

# Compute similarity matrix
cos1 <- similarity(one, method = "cosine")
cos2 <- similarity(two, method = "cosine")

# Compute networks
net1 <- TMFG(cos1)
net2 <- TMFG(cos2)

# Compare networks
compare_nets(net1, net2, title = list("One", "Two"), config = "spring")

# Change edge colors
compare_nets(net1, net2, title = list("One", "Two"),
config = "spring", qgraph.args = list(edge.color = "blue"))

SemNeT documentation built on Aug. 12, 2023, 5:06 p.m.