CID.LoadData: Load data file from directory
In SignacX: Cell Type Identification and Discovery from Single Cell Gene Expression Data
Description
Usage
Arguments
Value
Examples
View source: R/helper_functions.R
Description
Loads 'matrix.mtx' and 'genes.txt' files from a directory.
Usage
1
CID.LoadData(data.dir, mfn = "matrix.mtx")
Arguments
data.dir
Directory containing matrix.mtx and genes.txt.
mfn
file name; default is 'matrix.mtx'
Value
A sparse matrix with rownames equivalent to the names in genes.txt
Examples
1
2
3
4
5
6
7
8
9
10
## Not run:
# Loads data from SPRING
# dir is your path to the "categorical_coloring_data.json" file
dir = "./FullDataset_v1"
# load expression data
E = CID.LoadData(data.dir = dir)
## End(Not run)
SignacX documentation built on Nov. 18, 2021, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/helper_functions.R
Description
Loads 'matrix.mtx' and 'genes.txt' files from a directory.
Usage
1 | CID.LoadData(data.dir, mfn = "matrix.mtx")
|
Arguments
data.dir |
Directory containing matrix.mtx and genes.txt. |
mfn |
file name; default is 'matrix.mtx' |
Value
A sparse matrix with rownames equivalent to the names in genes.txt
Examples
1 2 3 4 5 6 7 8 9 10 | ## Not run:
# Loads data from SPRING
# dir is your path to the "categorical_coloring_data.json" file
dir = "./FullDataset_v1"
# load expression data
E = CID.LoadData(data.dir = dir)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.