CID.LoadEdges: Load edges from edge list for single cell network

In SignacX: Cell Type Identification and Discovery from Single Cell Gene Expression Data

Description

CID.LoadEdges loads edges, typically after running the SPRING pipeline.

Usage

CID.LoadEdges(data.dir)

Arguments

data.dir

A directory where "edges.csv" file is located

Value

The edge list in data frame format

Examples

## Not run: 
# Loads edges
file.dir = "https://kleintools.hms.harvard.edu/tools/client_datasets/"
file = "CITESEQ_EXPLORATORY_CITESEQ_5K_PBMCS/FullDataset_v1_protein/edges.csv"
download.file(paste0(file.dir, file, "?raw=true"), destfile = "edges.csv")

# data.dir is your path to the "edges.csv" file
edges = CID.LoadEdges(data.dir = ".")

## End(Not run)

SignacX documentation built on Nov. 18, 2021, 5:07 p.m.