Files in SoilR

Models of Soil Organic Matter Decomposition

R/TransportDecompositionOperator.R R/example.2DConstFC.Args.R R/MCSim.R R/SoilR.F0__deprecated_in_1.2.R R/example.2DBoundLinDecompOpFromFunction.R R/GeneralModel_14.R R/InternalFlux_by_PoolIndex.R R/ThreepFeedbackModel14.R R/OutFluxList_by_PoolName.R R/Graven2017.R R/IntCal20.R R/pp.R R/bind.C14curves.R R/SeriesLinearModel.R R/Model_by_PoolNames.R R/SoilR-package.R R/TwopParallelModel14.R R/fW.Candy.R R/example.2DGeneralDecompOpArgs.R R/IntCal13.R R/UnboundInflux.R R/fW.Demeter.R R/PoolId.R R/RothCModel.R R/InFluxList_by_PoolName.R R/TwopSeriesModel.R R/OutFluxList_by_PoolIndex.R R/fT.Demeter.R R/list.R R/SeriesLinearModel14.R R/InternalFlux_by_PoolName.R R/plotC14Pool.R R/TwopFeedbackModel.R R/ConstInFluxes.R R/solver.R R/InFluxList_by_PoolIndex.R R/SymbolicModel_by_PoolName.R R/FcAtm_deprecated_in_1.2.R R/example.ConstlinDecompOpFromMatrix.R R/GaudinskiModel14.R R/IVP_maker.R R/entropyRatePerTime.R R/fT.linear.R R/example.2DBoundInFluxesFromFunction.R R/ConstantOutFluxRateList_by_PoolName.R R/StateDependentInFluxVector.R R/InFluxes.R R/TwopFeedbackModel14.R R/BoundFc.R R/OutFlux_by_PoolIndex.R R/TwopParallelModel.R R/ConstFc.R R/DecompositionOperator_deprecated_in_1.2.R R/ConstantOutFluxRate_by_PoolName.R R/fT.Daycent2.R R/CenturyModel14.R R/spectralNorm.R R/warnings.R R/fW.Moyano.R R/getTransferMatrix.R R/Model_14.R R/C14Atm_NH.R R/setGlobalVariables.R R/MeanTT.R R/example.nestedTime2DMatrixList.R R/ConstantInFluxRate_by_PoolName.R R/ConstantInternalFluxRateList_by_PoolName.R R/PoolIndex.R R/ConstantInternalFluxRate_by_PoolIndex.R R/example.nestedTime3DArrayList.R R/systemAge.R R/fW.Daycent1.R R/makeListInstance.R R/InternalFluxList_by_PoolIndex.R R/GeneralModel.R R/fW.Skopp.R R/InFlux_by_PoolIndex.R R/NonAutonomousLinearModel.R R/listProduct.R R/InFlux_by_PoolName.R R/OutFlux_by_PoolName.R R/ConstantInFlux_by_PoolIndex.R R/euler.R R/fT.Standcarb.R R/Yasso07Model.R R/RespirationCoefficients.R R/example.BoundLinDecompOpFromFunction.R R/plotCPool.R R/OnepModel14.R R/deSolve.lsoda.wrapper.R R/example.2DUnBoundLinDecompOp.R R/fW.Century.R R/HelperFunctions.R R/fT.LandT.R R/SHCal20.R R/example.2DInFluxes.Args.R R/BoundInFluxes.R R/ThreepSeriesModel.R R/Hua2021.R R/PoolConnection_by_PoolName.R R/pathEntropy.R R/StateIndependentInFluxList_by_PoolIndex.R R/MeanAge.R R/fW.Gompertz.R R/ConstantInternalFluxRate_by_PoolName.R R/vecFuncMaker.R R/makelink.R R/ThreepSeriesModel14.R R/ConstantOutFluxRateList_by_PoolIndex.R R/UnBoundNonLinDecompOp_by_PoolNames.R R/fT.KB.R R/InternalFluxList_by_PoolName.R R/TimeMap.R R/TwopMMmodel.R R/incubation_experiment.R R/turnoverFit.R R/GeneralNlModel.R R/Fc.R R/OnepModel.R R/example.Time3DArrayList.R R/TimeRangeIntersection.R R/setOldClasses.R R/ThreepairMMmodel.R R/C14Atm.R R/fT.Arrhenius.R R/ICBMModel.R R/fT.Century1.R R/fW.Daycent2.R R/ThreepParallelModel.R R/HarvardForest14CO2.R R/tupelList.R R/bacwaveModel.R R/ConstantOutFluxRate_by_PoolIndex.R R/ConstLinDecompOp.R R/ThreepFeedbackModel.R R/IntCal09.R R/apply_to_state_and_time.R R/TwopSeriesModel14.R R/fT.Century2.R R/linesCPool.R R/example.Time2DArrayList.R R/transitTime.R R/ConstantInFluxRate_by_PoolIndex.R R/function.R R/PoolName.R R/CenturyModel.R R/fT.Daycent1.R R/NlModel.R R/pe.R R/ConstantInFluxList_by_PoolIndex.R R/S4ClassDefinitions.R R/NpYdot.R R/ydot_maker.R R/checkTargetClassOfElements.R R/DecompOp.R R/ScalarTimeMap.R R/plotPoolGraphFromTupleLists.R R/linMaker.R R/cycling.R R/Model.R R/ThreepParallelModel14.R R/BoundLinDecompOp.R R/UnBoundNonLinDecompOp.R R/example.TimeMapFromArray.R R/scalarFuncMaker.R R/PoolConnection_by_PoolIndex.R R/AutonomousLinearModel.R R/entropyRatePerJump.R R/ConstLinDecompOpWithLinearScaleFactor.R R/AWBmodel.R R/ICBM_N.R R/fW.RothC.R R/example.2DConstInFluxesFromVector.R R/linearScalarModel.R R/fW.Standcarb.R R/UnBoundLinDecompOp.R R/genericFunctions.R R/YassoModel.R R/fT.Q10.R R/ParallelModel.R R/Hua2013.R R/fT.RothC.R R/ConstantInternalFluxRateList_by_PoolIndex.R inst/examples/ModelExamples.R inst/examples/exICBMModel.R inst/tests/runit.test.Conversion.pdf inst/tests/example.getC.R inst/tests/runit.TwopParallel_ZeroInput.pdf inst/tests/runit.ThreepSerial_1.pdf inst/tests/example.getF14R_method__Model_14.R inst/tests/example.initialize_method__Model_14.R inst/tests/example.getReleaseFlux14_method__Model_14.R inst/tests/runit.BackwardTransferTime.pdf inst/tests/example.getTimeRange_method__TimeMap.R inst/tests/runit.MeanAge2.pdf inst/tests/example.GeneralModel_14.R inst/tests/runit.MeanAge3.pdf inst/tests/runit.TwopParallel_ZeroDecayInputOnly.pdf inst/tests/sall.R inst/tests/inst_debugHelpers.R inst/tests/testhelpers.R inst/tests/selectedMarkus.R inst/tests/runit.ThreepFeedback_1.pdf inst/tests/doubleExp.R inst/tests/runit.automatic.op.pdf inst/tests/runit.ThreepSerial_2.pdf inst/tests/runit.CarlosExample.pdf inst/tests/runit.FourpSerial_1.pdf inst/tests/runit.MeanAge.pdf inst/tests/2_Param.R inst/tests/all.R inst/tests/example.getReleaseFlux_method__Model.R inst/tests/runit.ThreepSerial_linear_vs_nonlinear.pdf inst/tests/inst.R inst/tests/runit.OnePool_C14_ZeroDecay_constantInputrate_c14_fromDelta14C.pdf inst/tests/runit.TwoPool_C14_equalDecay_ZeroInput_c14_fromDelta14C.pdf inst/tests/exampleMaker.R inst/tests/runit.OnePool_C14_equalDecay_ZeroInput_c14_fromDelta14C.pdf inst/tests/runit.OnePool_C14_equalDecay_ZeroInput_c14.pdf inst/tests/runit.TwoPool_C14_equalDecay_ZeroInput_c14.pdf inst/tests/runit.OnePool_C14_ZeroDecay_constantInputrate_c14.pdf inst/tests/runit.NonlinearAtmosphericModelLong.pdf inst/tests/runit.test.TimeReversedSolution.pdf inst/tests/runit.op.pdf inst/tests/runit.MeanAgeImpuls.pdf inst/tests/runit.NonlinearAtmosphericModelMeanAge.pdf inst/tests/runit.OnePool_C14_ZeroDecay_Zero_c14_fromDelta14C.pdf inst/tests/runit.MeanAge.Densities.pdf inst/tests/runit.OnePool_C14_ZeroDecay_Zero_c14.pdf inst/tests/runit.TwopParallel_constantInput.pdf inst/tests/runit.TwopFeedback.pdf inst/tests/requireSoilR/runit.correctness_of_Model.R inst/tests/requireSoilR/runit.all.possible.Model_14.arguments.R inst/tests/requireSoilR/runit.BoundFc.R inst/tests/requireSoilR/Rtest.R inst/tests/requireSoilR/runit.turnoverFit.R inst/tests/requireSoilR/runit.NlModel.R inst/tests/requireSoilR/runit.Model_14.R inst/tests/requireSoilR/runit.DeprecationWarnings.R inst/tests/requireSoilR/runit.check.pass.R inst/tests/requireSoilR/runit.nonlinear.R inst/tests/requireSoilR/runit.all.possible.Model.arguments.R inst/tests/requireSoilR/runit.all.possible.GeneralInflux.arguments.R inst/tests/requireSoilR/runit.all.possible.BoundFc.arguments.R inst/tests/requireSoilR/runit.all.possible.GeneralDecompOp.arguments.R inst/tests/requireSoilR/runit.BoundLinDecomOp.R inst/tests/requireSoilR/test.R inst/tests/requireSoilR/runit.check.pass.single.R inst/tests/src/runit.FluxRateConstructors.R inst/tests/src/runit.formatConversion.R inst/tests/src/selected_Carlos.R inst/tests/src/runit.MeanAge2.R inst/tests/src/runit.ThreepSerial_linear_vs_nonlinear.R inst/tests/src/runit.manuel.Manzoni.op.R inst/tests/src/runit.ThreepFeedback_MCSim.R inst/tests/src/runit.FluxConstructors.R inst/tests/src/runit.MeanAge.R inst/tests/src/runit.testNumberOfPools.R inst/tests/src/runit.TwopSerial_linear_vs_nonlinear.R inst/tests/src/selected_Markus.R inst/tests/src/runit.NonlinearOperators.R inst/tests/src/runit.ConstLinDecompOp.R inst/tests/src/runit.TwopSerial_MCSim.R inst/tests/src/runit.ConstLinDecompOpWithLinearScalarFactor.R inst/tests/src/notTested.corrado.R inst/tests/src/runit.LinearDecompositionOperator.R inst/tests/src/runit.Conversion.R inst/tests/src/selected_corrado.R inst/tests/src/functions_corrado.R inst/tests/src/runit.Century.R inst/tests/src/runit.SoilRF0.R inst/tests/src/runit.BackwardTransferTime.R inst/tests/src/corradoFluxLists.R inst/tests/src/runit.2TwopSerial_linear_vs_nonlinear.R inst/tests/src/runit.MeanAge3.R inst/tests/src/runit.Interfaces.R inst/tests/src/runit.tensorList.R inst/tests/src/corrado.R inst/tests/src/runit.TimeReversedSolution.R inst/tests/src/exampleModelRun.R inst/tests/src/lsodaForFluxes.R inst/tests/src/runit.operators.R inst/tests/src/runit.NonlinearAtmosphericModel.R inst/tests/src/runit.NonLinDecompOp_with_linear_fluxes.R inst/tests/TimeMap/runit.TimeMap_scalar_lag.R inst/tests/TimeMap/runit.TimeMap_no_lag.R inst/tests/TimeMap/runit.TimeMap_non_scalar_lag.R inst/tests/non_test/proto.MCSimulatorTest.R inst/tests/non_test/figure.pdf inst/tests/non_test/tasklist_proto.R inst/tests/non_test/Hiv.R inst/tests/non_test/FeM2.R inst/tests/non_test/ExampleTestSuite.R inst/tests/non_test/TestNp.R inst/tests/non_test/TwopParallelAnalytical.R inst/tests/non_test/test.paramest.R inst/tests/non_test/package.manual.help.R inst/tests/non_test/ThreepParallelAnalytical.R inst/tests/non_test/makePlots.R inst/tests/non_test/test.R inst/tests/protected/runit.GeneralModelPaper.R inst/tests/protected/runit.SoilRPaper1.R inst/tests/protected/runit.LowVerticalRatesPaper.R inst/tests/automaticR/BoundFcExamples.R inst/tests/automaticR/TimeMapExamples.R inst/tests/automaticR/runit.BoundFcTests.R inst/tests/automaticR/runit.TimeMapTests.R inst/tests/automatic/runit.c14_fromDelta14C.OnePool_C14_equalDecay_ZeroInput.R inst/tests/automatic/runit.FourpSerial_1.R inst/tests/automatic/runit.Manzoni.TwopFeedback.R inst/tests/automatic/runit.OnePool_C14_equalDecay_ZeroInput.R inst/tests/automatic/runit.ThreepFeedback_1.R inst/tests/automatic/runit.c14_fromDelta14C.OnePool_C14_ZeroDecay_Zero.R inst/tests/automatic/runit.TwopParallel_ZeroInput.R inst/tests/automatic/runit.c14_fromDelta14C.TwoPool_C14_equalDecay_ZeroInput.R inst/tests/automatic/runit.OnePool_C14_ZeroDecay_Zero.R inst/tests/automatic/runit.TwoPool_C14_equalDecay_ZeroInput.R inst/tests/automatic/runit.TwopParallel_constantInput.R inst/tests/automatic/runit.OnePool_C14_ZeroDecay_constantInputrate.R inst/tests/automatic/runit.CarlosExample.R inst/tests/automatic/runit.ThreepSerial_1.R inst/tests/automatic/runit.ThreepSerial_2.R inst/tests/automatic/runit.Manzoni.op.R inst/tests/automatic/runit.TwopParallel_ZeroDecayInputOnly.R inst/tests/automatic/runit.c14_fromDelta14C.OnePool_C14_ZeroDecay_constantInputrate.R build/SoilR.pdf man/ThreepSeriesModel.Rd man/plot-MCSim-method.Rd man/example.Time2DArrayList.Rd man/TwopFeedbackModel14.Rd man/ConstInFluxes.Rd man/ConstantInternalFluxRate_by_PoolName-character-character-missing-numeric-method.Rd man/ScalarTimeMap-class.Rd man/by_PoolName-ConstantOutFluxRate_by_PoolIndex-method.Rd man/fT.Arrhenius.Rd man/TwopFeedbackModel.Rd man/by_PoolIndex-ConstantInternalFluxRate_by_PoolName-ANY-ANY-method.Rd man/getMeanTransitTime-ConstLinDecompOp-method.Rd man/UnBoundNonLinDecompOp-missing-vector-vector-numeric-method.Rd man/initialize-TimeMap-method.Rd man/ICBMModel.Rd man/getAccumulatedRelease.Rd man/plotCPool.Rd man/fT.Century2.Rd man/sub-NlModel-character-ANY-ANY-method.Rd man/by_PoolName-ConstantInternalFluxRateList_by_PoolIndex-method.Rd man/fW.Moyano.Rd man/ConstantInternalFluxRateList_by_PoolName-list-method.Rd man/InFluxList_by_PoolName-class.Rd man/from_integer_flux_lists_with_defaults.Rd man/by_PoolIndex-ConstantInternalFluxRateList_by_PoolName-ANY-ANY-method.Rd man/OutFluxList_by_PoolIndex-class.Rd man/InternalFluxList_by_PoolIndex-list-method.Rd man/availableParticleSets.Rd man/getFormat-Fc-method.Rd man/getOutputReceivers-TransportDecompositionOperator-numeric-method.Rd man/GeneralPoolId-numeric-method.Rd man/GeneralPoolId.Rd man/InFlux_by_PoolName-function-character-method.Rd man/availableParticleSets-MCSim-method.Rd man/getLinearScaleFactor.Rd man/getC.Rd man/getTransferMatrix.Rd man/Delta14C_from_AbsoluteFractionModern-matrix-method.Rd man/BoundInFluxes.Rd man/CenturyModel.Rd man/getTimeRange-UnBoundInFluxes-method.Rd man/ConstInFluxes-ConstantInFluxList_by_PoolIndex-numeric-method.Rd man/PoolConnection_by_PoolIndex-missing-missing-character-method.Rd man/ScalarTimeMap-function-numeric-numeric-missing-missing-method.Rd man/getFunctionDefinition-ConstInFluxes-method.Rd man/OutFlux_by_PoolIndex-function-numeric-method.Rd man/ConstantOutFluxRateList_by_PoolIndex.Rd man/euler.Rd man/getReleaseFlux.Rd man/by_PoolIndex-ConstantOutFluxRate_by_PoolName-ANY-ANY-method.Rd man/CenturyModel14.Rd man/ConstantOutFluxRate_by_PoolIndex-class.Rd man/TimeMap-missing-missing-missing-numeric-list-method.Rd man/getInFluxes.Rd man/getDecompOp-NlModel-method.Rd man/OutFluxList_by_PoolName.Rd man/initialize-NlModel-method.Rd man/getReleaseFlux-NlModel-method.Rd man/RespirationCoefficients.Rd man/getReleaseFlux-Model_by_PoolNames-method.Rd man/sub-sub-MCSim-method.Rd man/AWBmodel.Rd man/example.2DBoundInFluxesFromFunction.Rd man/getF14R.Rd man/initialize-MCSim-method.Rd man/UnBoundLinDecompOp-class.Rd man/InternalFlux_by_PoolName.Rd man/getConstantInFluxVector.Rd man/getTimeRange.Rd man/by_PoolIndex.Rd man/Delta14C.Rd man/getDotOut.Rd man/add_plot-TimeMap-method.Rd man/BoundInFluxes-class.Rd man/PoolIndex.Rd man/fT.RothC.Rd man/GeneralModel.Rd man/YassoModel.Rd man/GeneralDecompOp-TimeMap-method.Rd man/Model-class.Rd man/Hua2013.Rd man/plot-TimeMap-method.Rd man/getF14C.Rd man/getFunctionDefinition-UnBoundLinDecompOp-method.Rd man/PoolIndex-numeric-method.Rd man/print-NlModel-method.Rd man/TimeMap.from.Dataframe.Rd man/TwopParallelModel14.Rd man/as.numeric-InFluxList_by_PoolName-method.Rd man/ConstantOutFluxRate_by_PoolName-class.Rd man/InternalFlux_by_PoolIndex-class.Rd man/fW.Standcarb.Rd man/cash-NlModel-method.Rd man/ConstantOutFluxRateList_by_PoolName-numeric-method.Rd man/ConstantOutFluxRateList_by_PoolIndex-list-method.Rd man/ConstantInFluxList_by_PoolName.Rd man/fT.Daycent2.Rd man/AbsoluteFractionModern-BoundFc-method.Rd man/getDecompOp.Rd man/fW.RothC.Rd man/TwopParallelModel.Rd man/getValues.Rd man/by_PoolIndex-ConstantInFluxRate_by_PoolName-ANY-ANY-method.Rd man/fT.linear.Rd man/example.2DBoundLinDecompOpFromFunction.Rd man/SeriesLinearModel14.Rd man/InFluxList_by_PoolIndex-class.Rd man/getCompartmentalMatrixFunc-TransportDecompositionOperator-method.Rd man/UnBoundNonLinDecompOp_by_PoolNames-class.Rd man/getInitialValues-NlModel-method.Rd man/ConstLinDecompOp-class.Rd man/getFunctionDefinition-ConstLinDecompOpWithLinearScalarFactor-method.Rd man/turnoverFit.Rd man/ScalarTimeMap.Rd man/PoolName-PoolName-method.Rd man/bacwaveModel.Rd man/getFunctionDefinition-ConstLinDecompOp-method.Rd man/ThreepFeedbackModel.Rd man/TimeMap-class.Rd man/plot-NlModel-method.Rd man/ThreepSeriesModel14.Rd man/getMeanTransitTime.Rd man/InFlux_by_PoolIndex.Rd man/getSolution-Model_by_PoolNames-method.Rd man/SHCal20.Rd man/InFlux_by_PoolName-class.Rd man/InFlux.Rd man/sub-subset-MCSim-method.Rd man/UnBoundNonLinDecompOp_by_PoolNames.Rd man/getTimeRange-UnBoundLinDecompOp-method.Rd man/example.2DUnBoundLinDecompOpFromFunction.Rd man/OutFluxList_by_PoolIndex.Rd man/PoolName-class.Rd man/InternalFluxList_by_PoolIndex-class.Rd man/PoolIndex-PoolIndex-method.Rd man/ConstantInternalFluxRateList_by_PoolIndex-class.Rd man/example.2DGeneralDecompOpArgs.Rd man/by_PoolIndex-OutFluxList_by_PoolName-character-character-method.Rd man/IntCal20.Rd man/TimeRangeIntersection.Rd man/Delta14C-BoundFc-method.Rd man/ConstantInFluxList_by_PoolIndex-ConstInFluxes-method.Rd man/check_id_length.Rd man/InternalFlux_by_PoolIndex-function-numeric-numeric-missing-method.Rd man/getConstantOutFluxRateList_by_PoolIndex-ConstLinDecompOp-method.Rd man/fT.Century1.Rd man/Model.Rd man/getTransferCoefficients.Rd man/StateIndependentInFluxList_by_PoolIndex.Rd man/StateDependentInFluxVector-class.Rd man/getOutputReceivers.Rd man/Hua2021.Rd man/TimeMap-missing-missing-missing-numeric-matrix-method.Rd man/GeneralModel_14.Rd man/ConstantInFluxRate_by_PoolIndex-class.Rd man/getConstantInFluxVector-ConstInFluxes-method.Rd man/BoundFc-character-method.Rd man/InFluxes-ConstantInFluxList_by_PoolIndex-method.Rd man/getParticleMonteCarloSimulator.Rd man/SymbolicModel_by_PoolNames-class.Rd man/BoundLinDecompOp-ANY-method.Rd man/ConstantOutFluxRate_by_PoolIndex-numeric-numeric-method.Rd man/getReleaseFlux14.Rd man/IntCal09.Rd man/initialize-Model_by_PoolNames-method.Rd man/initialize-DecompositionOperator-method.Rd man/ConstantInFluxList_by_PoolIndex-class.Rd man/getReleaseFlux-Model-method.Rd man/initialize-Model_14-method.Rd man/UnBoundInFluxes-function-method.Rd man/ConstLinDecompOp-matrix-missing-missing-missing-missing-method.Rd man/PoolIndex-class.Rd man/check_pool_ids.Rd man/ConstantOutFluxRateList_by_PoolName.Rd man/InFluxes-numeric-method.Rd man/InFluxes-class.Rd man/InternalFlux_by_PoolName-class.Rd man/fT.Demeter.Rd man/InFluxes-StateIndependentInFluxList_by_PoolIndex-method.Rd man/getFunctionDefinition-InFluxList_by_PoolName-method.Rd man/getF14-Model_14-method.Rd man/ConstantInternalFluxRate_by_PoolIndex-class.Rd man/getAccumulatedRelease-Model-method.Rd man/GeneralNlModel.Rd man/getC-Model_by_PoolNames-method.Rd man/getConstantCompartmentalMatrix-ConstLinDecompOpWithLinearScalarFactor-method.Rd man/ConstantInternalFluxRate_by_PoolIndex.Rd man/getTimeRange-ConstLinDecompOpWithLinearScalarFactor-method.Rd man/getConstLinDecompOp-ConstLinDecompOpWithLinearScalarFactor-method.Rd man/as.numeric-InternalFluxList_by_PoolName-method.Rd man/getFunctionDefinition-UnBoundInFluxes-method.Rd man/getF14R-Model_14-method.Rd man/getRightHandSideOfODE-Model_by_PoolNames-method.Rd man/getF14C-Model_14-method.Rd man/GaudinskiModel14.Rd man/listProduct.Rd man/ScalarTimeMap-function-missing-missing-missing-missing-method.Rd man/InternalFluxList_by_PoolName.Rd man/InFluxList_by_PoolName.Rd man/bind.C14curves.Rd man/Model_14.Rd man/PoolConnection_by_PoolIndex-ANY-ANY-missing-method.Rd man/ConstantInFluxRate_by_PoolName-class.Rd man/TwopSeriesModel.Rd man/getTransferCoefficients-NlModel-method.Rd man/show-NlModel-method.Rd man/Delta14C-ConstFc-method.Rd man/by_PoolName-ConstantInFlux_by_PoolIndex-method.Rd man/PoolConnection_by_PoolName.Rd man/PoolName-character-method.Rd man/fW.Candy.Rd man/getConstantInternalFluxRateList_by_PoolIndex.Rd man/no_outflux_warning.Rd man/InFluxList_by_PoolName-list-method.Rd man/TimeMap.new.Rd man/TimeMap-function-numeric-numeric-missing-missing-method.Rd man/ConstantInFluxList_by_PoolIndex-list-method.Rd man/deSolve.lsoda.wrapper.Rd man/fW.Daycent2.Rd man/ThreepParallelModel.Rd man/ConstLinDecompOp.Rd man/as.numeric-InternalFlux_by_PoolName-method.Rd man/GeneralDecompOp-function-method.Rd man/OutFlux.Rd man/ThreepFeedbackModel14.Rd man/ScalarTimeMap-missing-missing-missing-numeric-numeric-method.Rd man/PoolConnection_by_PoolIndex.Rd man/BoundFc.Rd man/plotPoolGraphFromTupleLists.Rd man/by_PoolIndex-function-character-character-method.Rd man/Delta14C_from_AbsoluteFractionModern-numeric-method.Rd man/UnBoundNonLinDecompOp-class.Rd man/add_plot.Rd man/InFlux_by_PoolIndex-function-numeric-method.Rd man/ScalarTimeMap-data.frame-missing-missing-missing-missing-method.Rd man/OutFlux_by_PoolName-class.Rd man/example.TimeMapFromArray.Rd man/fT.KB.Rd man/InternalFluxList_by_PoolName-class.Rd man/PoolIndex-PoolName-method.Rd man/getSolution.Rd man/fW.Century.Rd man/example.2DInFluxes.Args.Rd man/getTransitTimeDistributionDensity-ConstLinDecompOp-method.Rd man/BoundFc-class.Rd man/MCSim-class.Rd man/getFunctionDefinition-InFluxList_by_PoolIndex-method.Rd man/by_PoolIndex-InFlux_by_PoolName-character-character-method.Rd man/OutFlux_by_PoolName.Rd man/InternalFlux_by_PoolName-function-character-character-missing-method.Rd man/BoundFc-missing-method.Rd man/getConstantInternalFluxRateList_by_PoolIndex-ConstLinDecompOp-method.Rd man/AbsoluteFractionModern.Rd man/GeneralDecompOp-DecompOp-method.Rd man/TimeMap.Rd man/GeneralPoolId-character-method.Rd man/getRightHandSideOfODE-Model-method.Rd man/getFunctionDefinition-DecompositionOperator-method.Rd man/getDotOut-TransportDecompositionOperator-method.Rd man/check_duplicate_pool_names.Rd man/ConstantInternalFluxRateList_by_PoolIndex-numeric-method.Rd man/getOutputFluxes.Rd man/ParallelModel.Rd man/ConstantInFluxList_by_PoolIndex-numeric-method.Rd man/fT.LandT.Rd man/getCumulativeC-NlModel-method.Rd man/plotC14Pool.Rd man/SoilR-package.Rd man/InFlux_by_PoolName.Rd man/getLinearScaleFactor-ConstLinDecompOpWithLinearScalarFactor-method.Rd man/StateIndependentInFlux_by_PoolIndex-class.Rd man/FcAtm.from.Dataframe.Rd man/ConstantOutFluxRateList_by_PoolName-list-method.Rd man/initialize-ConstLinDecompOp-method.Rd man/Model_by_PoolNames.Rd man/getFunctionDefinition-StateDependentInFluxVector-method.Rd man/TimeMap-missing-missing-missing-numeric-numeric-method.Rd man/getNumberOfPools-NlModel-method.Rd man/ConstantInFluxRate_by_PoolName.Rd 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man/getCumulativeC.Rd man/getInitialValues.Rd man/HarvardForest14CO2.Rd man/initialize-UnBoundInFluxes-method.Rd man/ThreepParallelModel14.Rd man/ScalarTimeMap-missing-missing-missing-missing-numeric-method.Rd man/TimeMap-missing-missing-missing-numeric-array-method.Rd man/UnBoundLinDecompOp-function-method.Rd man/ConstLinDecompOpWithLinearScalarFactor.Rd man/pathEntropy.Rd man/getFunctionDefinition-TimeMap-method.Rd man/by_PoolName-ConstantInFluxList_by_PoolIndex-method.Rd man/BoundLinDecompOp.Rd man/getCompartmentalMatrixFunc-ConstLinDecompOp-method.Rd man/UnBoundNonLinDecompOp-function-missing-missing-missing-method.Rd man/Model_by_PoolNames-class.Rd man/entropyRatePerJump.Rd man/UnBoundInFluxes-class.Rd man/InFluxes-InFluxes-method.Rd man/getC14.Rd man/getOutputFluxes-NlModel-method.Rd man/by_PoolIndex-PoolConnection_by_PoolName-ANY-ANY-method.Rd man/getTransferMatrixFunc-TransportDecompositionOperator-method.Rd man/incubation_experiment.Rd man/getCompartmentalMatrixFunc-UnBoundNonLinDecompOp-method.Rd man/plot-Model_by_PoolNames-method.Rd man/getConstantOutFluxRateList_by_PoolIndex.Rd man/getC-Model-method.Rd man/TwopMMmodel.Rd man/GeneralDecompOp.Rd man/plotPoolGraph-SymbolicModel_by_PoolNames-method.Rd man/TimeMap-TimeMap-ANY-ANY-ANY-ANY-method.Rd man/getTimeRange-ConstLinDecompOp-method.Rd man/InFlux_by_PoolIndex-class.Rd man/getInFluxes-NlModel-method.Rd man/UnBoundNonLinDecompOp.Rd man/getValues-ConstFc-method.Rd man/UnBoundLinDecompOp.Rd man/C14Atm_NH.Rd man/fW.Daycent1.Rd man/InFluxList_by_PoolIndex.Rd man/TwopSeriesModel14.Rd man/OutFlux_by_PoolIndex.Rd man/ConstInFluxes-numeric-ANY-method.Rd man/getTimeRange-TimeMap-method.Rd man/ConstantOutFluxRateList_by_PoolName-class.Rd man/initialize-UnBoundLinDecompOp-method.Rd man/fT.Q10.Rd man/ConstantOutFluxRateList_by_PoolIndex-class.Rd man/Yasso07Model.Rd man/availableParticleProperties.Rd man/InFluxes-TimeMap-method.Rd man/InternalFlux_by_PoolIndex.Rd man/example.2DConstInFluxesFromVector.Rd man/Fc-class.Rd man/StateIndependentInFluxList_by_PoolIndex-class.Rd man/initialize-Model-method.Rd man/as.numeric-OutFluxList_by_PoolName-method.Rd man/getTransferMatrixFunc.Rd man/getReleaseFlux14-Model_14-method.Rd man/linearScalarModel.Rd man/ConstantInternalFluxRateList_by_PoolIndex.Rd man/getTimeRange-DecompositionOperator-method.Rd man/systemAge.Rd man/fT.Standcarb.Rd man/state_variable_names.Rd man/RothCModel.Rd man/plot-Model-method.Rd man/by_PoolName-ConstantOutFluxRateList_by_PoolIndex-method.Rd man/ConstantOutFluxRate_by_PoolIndex.Rd man/ConstantInternalFluxRateList_by_PoolName.Rd man/getFunctionDefinition-TransportDecompositionOperator-method.Rd man/InFluxList_by_PoolIndex-list-method.Rd man/DecompOp-class.Rd man/TransportDecompositionOperator-class.Rd man/StateIndependentInFluxList_by_PoolIndex-list-method.Rd man/getRightHandSideOfODE.Rd man/InternalFluxList_by_PoolName-list-method.Rd man/fW.Gompertz.Rd man/initialize-TransportDecompositionOperator-method.Rd man/by_PoolName-ConstantInFluxRate_by_PoolIndex-method.Rd man/getFunctionDefinition.Rd man/NlModel-class.Rd man/example.Time3DArrayList.Rd man/entropyRatePerTime.Rd man/as.character-TimeMap-method.Rd man/getConstantCompartmentalMatrix.Rd man/InternalFlux_by_PoolName-function-missing-missing-character-method.Rd man/ConstantInternalFluxRate_by_PoolName.Rd man/availableResidentSets-MCSim-method.Rd man/ConstLinDecompOp_by_PoolName.Rd man/ConstFc.Rd man/ConstantInFlux_by_PoolIndex-class.Rd man/ConstFc-class.Rd man/getInFluxes-Model-method.Rd man/InFluxes.Rd man/getFormat.Rd man/OnepModel.Rd man/getNumberOfPools-TransportDecompositionOperator-method.Rd man/getTransitTimeDistributionDensity.Rd man/fW.Demeter.Rd man/SeriesLinearModel.Rd man/ThreepairMMmodel.Rd man/example.nestedTime2DMatrixList.Rd man/PoolName.Rd man/computeResults-MCSim-method.Rd man/getConstLinDecompOp.Rd man/ConstLinDecompOpWithLinearScalarFactor-class.Rd man/getTimes-Model-method.Rd man/GeneralDecompOp-matrix-method.Rd man/getC-NlModel-method.Rd man/getCompartmentalMatrixFunc.Rd man/BoundLinDecompOp-UnBoundLinDecompOp-method.Rd man/PoolName-PoolIndex-method.Rd man/TimeMap-data.frame-missing-missing-missing-missing-method.Rd man/by_PoolIndex-OutFlux_by_PoolName-character-character-method.Rd