inst/tests/selectedMarkus.R

In SoilR: Models of Soil Organic Matter Decomposition

#!/usr/bin/Rscript
# vim:set ff=unix expandtab ts=2 sw=2:
#options(warn=-1)
#source("prolog.R")
require("RUnit")
require("pkgload")
source("testhelpers.R")
#pkgload::load_all('../../',export_all=FALSE)
pkgload::load_all('../../')
#require('SoilR')
alltests <- defineTestSuite(
   name="selectedMarkus"
   ,dirs=c("src","automatic","automaticR","TimeMap",'requireSoilR')
   #,testFileRegexp = "^runit.FluxRateConstructors.R$|^runit.FluxConstructors.R$|^runit.PoolTopology.R$"
   #,testFileRegexp = "^runit.PoolTopology.R$"
   #,testFileRegexp = "^runit.FluxRateConstructors.R$"
   #,testFileRegexp = "^runit.FluxConstructors.R$"
   #,testFileRegexp = "^runit.NonlinearOperators.R$"
   ,testFileRegexp = "^runit.Century.R$"
   #,testFileRegexp = "^runit.Gaudinsky.R$"
   #,testFileRegexp = "^runit.ConstLinDecompOpWithLinearScalarFactor.R$"
   #,testFileRegexp = "^runit.ConstLinDecompOp.R$"
   #,testFileRegexp = "^runit.NonLinDecompOp_with_linear_fluxes.R$"
   #,testFileRegexp = "^runit.check.pass.R$"
   #,testFileRegexp = "^runit.all.possible.GeneralDecompOp.arguments.R"
   #,testFileRegexp = "^runit.TimeMap_no_lag.R"

   ################################################################
   #,testFuncRegexp = "^test.ConstLinDecompOpWithoutOutFluxes$"
   #,testFuncRegexp = "^test.ConstLinDecompOpFromNamedFluxes$"
   #,testFuncRegexp = "^test.ConstLinDecompOp$"
   #,testFuncRegexp = "^test.NonLinDecompOp_with_linear_fluxes_by_Index$"
   #,testFuncRegexp = "^test.NonLinDecompOp_with_linear_fluxes_by_Name$"
   #,testFuncRegexp = "^test.ConstLinDecompOpWithLinearScalarFactor_check_external_flux_args$"
   #,testFuncRegexp = "^test.Example"
   #,testFuncRegexp = "^test.Gaudinsky"
   #,testFuncRegexp = "^test.Gaudinsky"
   #,testFuncRegexp = "^test.function_by_PoolIndex$"
   #,testFuncRegexp ="^test.timedependentInput$"
   #,testFuncRegexp ="^test.TimeMapFromListOfVectorAndListZeroLag$"
   #,testFuncRegexp ="^test.ExtractionOfConstantLinDecompOpAndXi$"
   ,testFuncRegexp ="^test.*$"

   ,rngKind = "Marsaglia-Multicarry"
   ,rngNormalKind = "Kinderman-Ramage"
)

#testResult <- runTestSuite(alltests,verbose=0)
testResult <- runTestSuite(alltests)
#print(testResult)
printTextProtocol(testResult)
#produce exitstatus ne 0 for buildbot to notice
ef=getErrors(testResult)
print(ef)
n=ef$nErr+ef$nFail
if (n>0) {stop(1)}