Genomic Region Detection via Spatial Convex Clustering. See <https://arxiv.org/abs/1611.04696> for details.

Author | John Nagorski |

Date of publication | 2016-11-23 09:38:35 |

Maintainer | John Nagorski<jn13@rice.edu> |

License | GPL-3 |

Version | 0.1.0 |

**CNVPlotSeriesMeans:** Plot subjects' copy number data with cluster means overlayed...

**GetClusters:** Compute Clusters from fusions

**GetGammaCV:** Get optimal cross validated gamma values by various rules

**GetParBlocks:** Function to compute blocks for parallization; should not be...

**hello:** Hello, World!

**methy:** A subset of methylation data for 50 subjects

**MethyRegionPlot:** Plots methylation data by Genomic Coordinates for a given...

**PlotCV:** A function for plotting cross validation errors

**SpaCC:** Base function for computing SpaCC solution for single...

**SpaCC_CV:** Perform Cross Validation to select gamma/sparsity level

**SpaCC_Methy:** Performs Spatial Convex Clustering for methylation data

**SpaCC_Missing:** Solve Spatial Convex Clustering problem for missing data

**SpaCC_Path:** Solve Spatial Convex Clustering problem for path of...

**SpaCC_Path_Parallel:** Solve Spatial Convex Clustering problem for path of...

**ThreshV:** Threshold differences

SpaCCr

SpaCCr/tests

SpaCCr/tests/testthat.R

SpaCCr/tests/testthat

SpaCCr/tests/testthat/test_basicrun.R

SpaCCr/src

SpaCCr/src/Makevars

SpaCCr/src/SpaCC.cpp

SpaCCr/src/RcppExports.cpp

SpaCCr/NAMESPACE

SpaCCr/data

SpaCCr/data/methy.rda

SpaCCr/R

SpaCCr/R/data.R
SpaCCr/R/RcppExports.R
SpaCCr/R/SpaCCRFunctions.R
SpaCCr/R/stub.R
SpaCCr/R/hello.R
SpaCCr/MD5

SpaCCr/DESCRIPTION

SpaCCr/man

SpaCCr/man/SpaCC_Path_Parallel.Rd
SpaCCr/man/GetClusters.Rd
SpaCCr/man/SpaCC.Rd
SpaCCr/man/PlotCV.Rd
SpaCCr/man/SpaCC_Path.Rd
SpaCCr/man/SpaCC_Missing.Rd
SpaCCr/man/SpaCC_Methy.Rd
SpaCCr/man/SpaCC_CV.Rd
SpaCCr/man/GetParBlocks.Rd
SpaCCr/man/GetGammaCV.Rd
SpaCCr/man/ThreshV.Rd
SpaCCr/man/methy.Rd
SpaCCr/man/CNVPlotSeriesMeans.Rd
SpaCCr/man/MethyRegionPlot.Rd
SpaCCr/man/hello.Rd
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