predict.archetype: Predict presence of archetypes from fitted model

Description Arguments Details Value Method Authors Examples

Description

predict.archetype

Arguments

object

a model object returned from SpeciesMix

new.obs

covariate data at new locations for predictions. Must be a data frame with same row names as in the model formula

...

further arguments passed to or from other methods.

Details

predicts probability of occurance at new location with standard errors calculated using delta method

Value

fit

predicted probability of presence

se.fit

standard error of fit

Method

predict(object, new.obs,...)

Authors

Piers Dunstan and Scott Foster

Examples

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G <-4
S <- 50
theta <- matrix(c(-9,35,-32,0,0.7,0,-16,23,-8.2,-3,-0.6,0.8),4,3,byrow=TRUE)
dat <- data.frame(y=rep(1,200),x=runif(200,0,2.5),z=rnorm(200,10,2))
dat <- data.frame(dat,x.sq=dat$x^2)
dat1 <- artificial.data(y~1+x+x.sq,dat,theta,S)
fm4 <- SpeciesMix(obs~1+x+x.sq,dat1$pa,dat,G=4,em.prefit=TRUE,em.refit=1,est.var=TRUE)
new.obs <- data.frame(x=seq(0,2.5,0.01),x.sq=seq(0,2.5,0.01)^2)
predict(fm4,new.obs)

SpeciesMix documentation built on May 29, 2017, 5:47 p.m.