getInteUMGraph: Get the reconstructed condition-specific lncRNA-regulated...
In SubpathwayLNCE: Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Get the reconstructed condition-specific LncRNA-regulated signal pathways embedded by lncRNAs of competitive regulation through linking to their regulated-mRNAs.
Usage
1
getInteUMGraph(LncGenePairs)
Arguments
LncGenePairs
A data frame. It contains two columns, the first is lncRNA names and the second is mRNA names.
Details
The argument "LncGenePairs" represents competitively regulated lncRNA-mRNA interactions, which can be returned from the getLncGenePairs.
Value
A graph list.
Author(s)
Xinrui Shi, Chunquan Li and Xia Li
See Also
Examples
1
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7
## Not run:
### Integrate lncRNAs of competitive regulation into KEGG pathway graphs ###
LncGenePairs<-GetExampleData(exampleData="LncGenePairs")
inteUMGraph<-getInteUMGraph(LncGenePairs)
## End(Not run)
SubpathwayLNCE documentation built on May 1, 2019, 10:25 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Get the reconstructed condition-specific LncRNA-regulated signal pathways embedded by lncRNAs of competitive regulation through linking to their regulated-mRNAs.
Usage
1 | getInteUMGraph(LncGenePairs)
|
Arguments
LncGenePairs |
A data frame. It contains two columns, the first is lncRNA names and the second is mRNA names. |
Details
The argument "LncGenePairs" represents competitively regulated lncRNA-mRNA interactions, which can be returned from the getLncGenePairs.
Value
A graph list.
Author(s)
Xinrui Shi, Chunquan Li and Xia Li
See Also
Examples
1 2 3 4 5 6 7 | ## Not run:
### Integrate lncRNAs of competitive regulation into KEGG pathway graphs ###
LncGenePairs<-GetExampleData(exampleData="LncGenePairs")
inteUMGraph<-getInteUMGraph(LncGenePairs)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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