SubpathwayLNCE: Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory

Identify dysfunctional subpathways competitively regulated by lncRNAs through integrating lncRNA-mRNA expression profile and pathway topologies.

AuthorXinrui Shi, Chunquan Li and Xia Li
Date of publication2016-01-19 08:17:59
MaintainerXinrui Shi <xinrui103@163.com>
LicenseGPL (>= 2)
Version1.0

View on CRAN

Files

SubpathwayLNCE
SubpathwayLNCE/inst
SubpathwayLNCE/inst/doc
SubpathwayLNCE/inst/doc/SubpathwayLNCE.Rnw
SubpathwayLNCE/inst/doc/SubpathwayLNCE.pdf
SubpathwayLNCE/inst/doc/SubpathwayLNCE.R
SubpathwayLNCE/NAMESPACE
SubpathwayLNCE/data
SubpathwayLNCE/data/envData.rda
SubpathwayLNCE/data/datalist
SubpathwayLNCE/R
SubpathwayLNCE/R/getLocSubGraphLnc.r
SubpathwayLNCE/R/getBackgroundLnc.r
SubpathwayLNCE/R/getEdgeLabel.r
SubpathwayLNCE/R/identifyLncGraphW.r
SubpathwayLNCE/R/getExampleData.r
SubpathwayLNCE/R/getKGeneFromGene.r
SubpathwayLNCE/R/getLncGenePairs.r
SubpathwayLNCE/R/getOneNodePath.r
SubpathwayLNCE/R/getEdgeLty.r
SubpathwayLNCE/R/plotAnnGraph.r
SubpathwayLNCE/R/getEnvironmentData.r
SubpathwayLNCE/R/printGraphW.r
SubpathwayLNCE/R/getNodeLabel.r
SubpathwayLNCE/R/getInteGraphList.r
SubpathwayLNCE/R/getInteUMGraph.r
SubpathwayLNCE/R/ExpProcess.r
SubpathwayLNCE/R/plotGraphL.r
SubpathwayLNCE/R/getLayout.r
SubpathwayLNCE/R/getSymbolFromGene.r
SubpathwayLNCE/vignettes
SubpathwayLNCE/vignettes/SubpathwayLNCE.Rnw
SubpathwayLNCE/MD5
SubpathwayLNCE/build
SubpathwayLNCE/build/vignette.rds
SubpathwayLNCE/DESCRIPTION
SubpathwayLNCE/man
SubpathwayLNCE/man/getExampleData.Rd SubpathwayLNCE/man/getBackgroundLnc.Rd SubpathwayLNCE/man/identifyLncGraphW.Rd SubpathwayLNCE/man/plotGraphL.Rd SubpathwayLNCE/man/envData.Rd SubpathwayLNCE/man/SubpathwayLNCE-internal.Rd SubpathwayLNCE/man/getLncGenePairs.Rd SubpathwayLNCE/man/printGraphW.Rd SubpathwayLNCE/man/getInteUMGraph.Rd SubpathwayLNCE/man/getInteGraphList.Rd SubpathwayLNCE/man/getLocSubGraphLnc.Rd SubpathwayLNCE/man/plotAnnGraph.Rd

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