SuperExactTest: Exact Test and Visualization of Multi-Set Intersections
Version 0.99.3

Identification of sets of objects with shared features is a common operation in all disciplines. Analysis of intersections among multiple sets is fundamental for in-depth understanding of their complex relationships. This package implements a theoretical framework for efficient computation of statistical distributions of multi-set intersections based upon combinatorial theory, and provides multiple scalable techniques for visualizing the intersection statistics. The statistical algorithm behind this package was published in Wang et al (2015), doi:10.1038/srep16923.

AuthorMinghui Wang, Yongzhong Zhao and Bin Zhang
Date of publication2017-05-06 05:18:26 UTC
MaintainerMinghui Wang <minghui.wang@mssm.edu>
LicenseGPL-3
Version0.99.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SuperExactTest")

Getting started

Multi-set Intersection Analysis Using SuperExactTest

Popular man pages

Cancer: Cancer Census Dataset
cpsets: Multi-Set Intersection Probability
intersect: Set Operations
msets: Class to Contain Multi-Set Intersections
plot: Draw Multi-Set Intersections
SuperExactTest: SuperExactTest Package
supertest: Calculate Intersections Among Multiple Sets and Perform...
See all...

All man pages Function index File listing

Man pages

Cancer: Cancer Census Dataset
cdiff: Set Difference Probability
cpsets: Multi-Set Intersection Probability
deBarcode: Decrypt Barcode
eqtls: cis-eQTLs
GWAS: GAWS Catalog Dataset
intersect: Set Operations
intersectElements: Find Intersection Membership
jacaard: Calculate Jaccard Index
MSET: Exact Test of Multi-Set Intersection
msets: Class to Contain Multi-Set Intersections
plot: Draw Multi-Set Intersections
summary: Summarize an msets Object
SuperExactTest: SuperExactTest Package
supertest: Calculate Intersections Among Multiple Sets and Perform...

Functions

Cancer Man page
GWAS Man page
MSET Man page Source code
SuperExactTest Man page
axisLen Source code
barcodeRelation Source code
barcodeSuperset Source code
cis.eqtls Man page
countCharOccurrences Source code
cpdiff Man page Source code
cpone Man page Source code
cpsets Man page Source code
cpsets.simulation Source code
deBarcode Man page Source code
dpdiff Man page Source code
dpone Man page Source code
dpsets Man page Source code
enumerateIntersecSizes Source code
exc2incIntersect Source code
exclusiveIntersect0 Source code
getPlotParams Source code
getXY Source code
incIntersect Source code
intersect Man page Source code
intersect.list Source code
intersectElements Man page Source code
is.subSet Source code
jaccard Man page Source code
mkBarcode Source code
mkBarcode.degree Source code
msets Man page
plot.msets Man page Source code
plot.msets.circular Source code
plot.msets.landscape Source code
print.msets Source code
print.summary.msets Source code
summary.msets Man page Source code
supertest Man page
supertest,list-method Man page
supertest.list Source code
union Man page Source code
union.list Source code

Files

inst
inst/doc
inst/doc/set_html.html
inst/doc/set_html.R
inst/doc/set_html.Rmd
src
src/cmp.c
src/registerDynamicSymbol.c
src/pdiff.c
src/pmvhyper.c
src/dmvhyper.c
src/binom.c
src/pone.c
src/mvhyper.h
src/dmvhyperLog.c
NAMESPACE
data
data/Cancer.RData
data/eqtls.RData
data/GWAS.RData
R
R/miscellanea.R
R/supertest.R
R/vis.R
R/MSET.R
R/psets.R
R/intersect.R
vignettes
vignettes/set_html.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/Cancer.Rd
man/GWAS.Rd
man/deBarcode.Rd
man/supertest.Rd
man/SuperExactTest.Rd
man/cdiff.Rd
man/jacaard.Rd
man/intersect.Rd
man/intersectElements.Rd
man/MSET.Rd
man/cpsets.Rd
man/plot.Rd
man/summary.Rd
man/msets.Rd
man/eqtls.Rd
SuperExactTest documentation built on May 19, 2017, 8:48 a.m.

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