GWAS: GAWS Catalog Dataset

In SuperExactTest: Exact Test and Visualization of Multi-Set Intersections

GAWS Catalog Dataset

Description

This example dataset contains a list of gene sets associated with six types of clinical traits curated in the GWAS Catalog.

Usage

data(GWAS)

Details

The six clinical traits are:

• NEU (Bipolar disorder and schizophrenia, Schizophrenia, Major depressive disorder, Alzheimer's disease, Parkinson's disease, Cognitive performance, Bipolar disorder);

• INF (Crohn's disease, Ulcerative colitis, Inflammatory bowel disease, Rheumatoid arthritis, Multiple sclerosis, Systemic lupus erythematosus);

• CVD (Type 2 diabetes, Coronary heart disease, Blood pressure, total Cholesterol, HDL cholesterol, Triglycerides);

• HT (height);

• IgG (IgG glycosylation);

• OB (obesity, obesity related traits).

References

Minghui Wang, Yongzhong Zhao, and Bin Zhang (2015). Efficient Test and Visualization of Multi-Set Intersections. Scientific Reports 5: 16923.

See Also

supertest

SuperExactTest documentation built on March 23, 2022, 5:07 p.m.