Cancer: Cancer Census Dataset

In SuperExactTest: Exact Test and Visualization of Multi-Set Intersections

Cancer Census Dataset

Description

This example dataset contains a list of seven cancer predisposition gene sets.

Usage

data(Cancer)

Details

The seven cancer predisposition gene sets are:

• NRG (Rahman, N. Realizing the promise of cancer predisposition genes. Nature 2014, 505:302-308);

• NBG (Tamborero, D. et al. Comprehensive identification of mutational cancer driver genes across 12 tumor types. Scientific reports 2013, 3:2650);

• LDG (Kandoth, C. et al. Mutational landscape and significance across 12 major cancer types. Nature 2013, 502:333-339);

• GGG (Lawrence, M. S. et al. Discovery and saturation analysis of cancer genes across 21 tumour types. Nature 2014, 505:495-501);

• ELG (Garraway, L. A. & Lander, E. S. Lessons from the cancer genome. Cell 2013, 153:17-37);

• CCG (Futreal, P. A. et al. A census of human cancer genes. Nature reviews. Cancer 2004, 4:177-183);

• BVG (Vogelstein, B. et al. Cancer genome landscapes. Science 2013, 339:1546-1558).

References

Minghui Wang, Yongzhong Zhao, and Bin Zhang (2015). Efficient Test and Visualization of Multi-Set Intersections. Scientific Reports 5: 16923.

See Also

supertest

SuperExactTest documentation built on March 23, 2022, 5:07 p.m.