TANOVA: Time Course Analysis of Variance for Microarray

Functions for performing analysis of variance on time course microarray data

Author
Baiyu Zhou <zhouby98@stanford.edu> and Weihong Xu <weihongx@stanford.edu>
Date of publication
2012-10-29 08:57:44
Maintainer
Weihong Xu <weihongx@stanford.edu>
License
LGPL
Version
1.0.0
URLs

View on CRAN

Man pages

data.form
Convert input data into appropriate format for TANOVA
design.matrix
Generate design matrix for two-way factorial analysis
fdr.table
TANOVA False Discovery Table
F.stat
Compute F-statistics for ANOVA model
F.stat.null
Generation of null F-statistics by bootstrap method
group.ix
This is an internal function
ls.estimate
Least square estimation
NANOVA.test
Non-parametric analysis of variance (NANOVA)
prior.sigma
Compute the prior of covariance matrix
proj.data
Projection of Raw Data
proj.dir
projection direction
sigma.hat
Estimation of Covariance Matrix
sig.number
The number of significant genes in the FDR table at specified...
tanova
Classification of genes by time course analysis of...
trigammainverse
Trigamma Inverse Function
z.score
Z Score

Files in this package

TANOVA
TANOVA/INDEX
TANOVA/NAMESPACE
TANOVA/man
TANOVA/man/design.matrix.Rd
TANOVA/man/NANOVA.test.Rd
TANOVA/man/ls.estimate.Rd
TANOVA/man/prior.sigma.Rd
TANOVA/man/proj.data.Rd
TANOVA/man/group.ix.Rd
TANOVA/man/sigma.hat.Rd
TANOVA/man/trigammainverse.Rd
TANOVA/man/fdr.table.Rd
TANOVA/man/F.stat.Rd
TANOVA/man/tanova.Rd
TANOVA/man/data.form.Rd
TANOVA/man/sig.number.Rd
TANOVA/man/proj.dir.Rd
TANOVA/man/z.score.Rd
TANOVA/man/F.stat.null.Rd
TANOVA/inst
TANOVA/inst/doc
TANOVA/inst/doc/TANOVAmanual.pdf
TANOVA/DESCRIPTION
TANOVA/MD5
TANOVA/R
TANOVA/R/NANOVA.test.R
TANOVA/R/group.ix.R
TANOVA/R/gene.classifier1.R
TANOVA/R/prior.sigma.R
TANOVA/R/trigammaInverse.R
TANOVA/R/design.matrix.R
TANOVA/R/gene.classifier3.R
TANOVA/R/F.stat.R
TANOVA/R/data.form.R
TANOVA/R/z.score.R
TANOVA/R/tanova.R
TANOVA/R/gene.classifier2.R
TANOVA/R/NANOVA.test2.R
TANOVA/R/sig.number.R
TANOVA/R/sigma.hat.R
TANOVA/R/NANOVA.test3.R
TANOVA/R/proj.dir2.R
TANOVA/R/TANOVAmanual.R
TANOVA/R/proj.data.R
TANOVA/R/F.stat.null2.R
TANOVA/R/prior.SIGMA2.R
TANOVA/R/ls.estimate.R
TANOVA/R/F.stat.null.R
TANOVA/R/F.stat2.R
TANOVA/R/fdr.table.R
TANOVA/R/proj.dir.R