Description Usage Arguments Value Author(s) See Also
Estimate the number of significant genes in the FDR table using user specified cutoff.
1 | sig.number(fdr.table,FDR=0.05,qt=-1)
|
fdr.table |
a table containing the estimated FDR for each gene |
FDR |
the false discovery cutoff, the default is 0.05 |
qt |
a vector of quantiles for which FDR is estimated by averaging over B times of number of false genes. If qt=0.25 (0.5, 0.75, 0.9), FDR is estimated by 25% (50%, 75%, 90%) quantiles of false genes over B times.Default is -1, which means all genes are used. |
The function returns a number showing the number of significant genes at specified FDR cutoff.
Baiyu Zhou zhouby98@stanford.edu & Weihong xu weihongx@stanford.edu
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