TCGA2STAT: Simple TCGA Data Access for Integrated Statistical Analysis in R
Version 1.2

Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.

AuthorYing-Wooi Wan, Genevera I. Allen, Matthew L. Anderson, Zhandong Liu
Date of publication2015-10-22 22:14:30
MaintainerYing-Wooi Wan <yingwoow@bcm.edu>
LicenseGPL-2
Version1.2
URL http://www.liuzlab.org/TCGA2STAT/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("TCGA2STAT")

Getting started

Package overview
TCGA2STAT

Popular man pages

geneinfo: Gene Map for hg19
getTCGA: Get TCGA Data.
OMICSBind: Merge Data of Two Types of Molecular Profiles.
SampleSplit: Split the Data by Sample Types.
TCGA2STAT-package: TCGA2STAT: TCGA to Statistical Analysis
TumorNormalMatch: Get Matched Tumor and Normal Samples.
See all...

All man pages Function index File listing

Man pages

geneinfo: Gene Map for hg19
getTCGA: Get TCGA Data.
OMICSBind: Merge Data of Two Types of Molecular Profiles.
SampleSplit: Split the Data by Sample Types.
TCGA2STAT-package: TCGA2STAT: TCGA to Statistical Analysis
TumorNormalMatch: Get Matched Tumor and Normal Samples.

Functions

Files

inst
inst/doc
inst/doc/TCGA2STAT.html
inst/doc/TCGA2STAT.Rmd
NAMESPACE
data
data/geneinfo.rda
R
R/TCGA2STAT.R
vignettes
vignettes/viz.misc.R
vignettes/TCGA2STAT_vig.bib
vignettes/TCGA2STAT.Rmd
vignettes/DataPlatforms.pdf
vignettes/CancerDataChecklist.pdf
vignettes/figs
vignettes/figs/hist_27kov.png
vignettes/figs/yplot.png
vignettes/figs/tcga2statlogo4-1024x294.png
vignettes/figs/hist_exp_u133aov.png
vignettes/figs/indplot2.png
vignettes/figs/kmplot.png
vignettes/figs/lusc.rnaseq2.saved
vignettes/figs/Thumbs.db
vignettes/figs/lusc.methyl.saved
vignettes/figs/hist_expovdat.png
vignettes/figs/hist_huexov.png
vignettes/figs/xplot.png
vignettes/figs/indplot.png
MD5
build
build/vignette.rds
DESCRIPTION
man
man/TCGA2STAT-package.Rd
man/getTCGA.Rd
man/SampleSplit.Rd
man/geneinfo.Rd
man/TumorNormalMatch.Rd
man/OMICSBind.Rd
TCGA2STAT documentation built on May 19, 2017, 6:48 p.m.

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