TCGA2STAT: Simple TCGA Data Access for Integrated Statistical Analysis in R

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Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.

Author
Ying-Wooi Wan, Genevera I. Allen, Matthew L. Anderson, Zhandong Liu
Date of publication
2015-10-22 22:14:30
Maintainer
Ying-Wooi Wan <yingwoow@bcm.edu>
License
GPL-2
Version
1.2
URLs

View on CRAN

Man pages

geneinfo
Gene Map for hg19
getTCGA
Get TCGA Data.
OMICSBind
Merge Data of Two Types of Molecular Profiles.
SampleSplit
Split the Data by Sample Types.
TCGA2STAT-package
TCGA2STAT: TCGA to Statistical Analysis
TumorNormalMatch
Get Matched Tumor and Normal Samples.

Files in this package

TCGA2STAT
TCGA2STAT/inst
TCGA2STAT/inst/doc
TCGA2STAT/inst/doc/TCGA2STAT.html
TCGA2STAT/inst/doc/TCGA2STAT.Rmd
TCGA2STAT/NAMESPACE
TCGA2STAT/data
TCGA2STAT/data/geneinfo.rda
TCGA2STAT/R
TCGA2STAT/R/TCGA2STAT.R
TCGA2STAT/vignettes
TCGA2STAT/vignettes/viz.misc.R
TCGA2STAT/vignettes/TCGA2STAT_vig.bib
TCGA2STAT/vignettes/TCGA2STAT.Rmd
TCGA2STAT/vignettes/DataPlatforms.pdf
TCGA2STAT/vignettes/CancerDataChecklist.pdf
TCGA2STAT/vignettes/figs
TCGA2STAT/vignettes/figs/hist_27kov.png
TCGA2STAT/vignettes/figs/yplot.png
TCGA2STAT/vignettes/figs/tcga2statlogo4-1024x294.png
TCGA2STAT/vignettes/figs/hist_exp_u133aov.png
TCGA2STAT/vignettes/figs/indplot2.png
TCGA2STAT/vignettes/figs/kmplot.png
TCGA2STAT/vignettes/figs/lusc.rnaseq2.saved
TCGA2STAT/vignettes/figs/Thumbs.db
TCGA2STAT/vignettes/figs/lusc.methyl.saved
TCGA2STAT/vignettes/figs/hist_expovdat.png
TCGA2STAT/vignettes/figs/hist_huexov.png
TCGA2STAT/vignettes/figs/xplot.png
TCGA2STAT/vignettes/figs/indplot.png
TCGA2STAT/MD5
TCGA2STAT/build
TCGA2STAT/build/vignette.rds
TCGA2STAT/DESCRIPTION
TCGA2STAT/man
TCGA2STAT/man/TCGA2STAT-package.Rd
TCGA2STAT/man/getTCGA.Rd
TCGA2STAT/man/SampleSplit.Rd
TCGA2STAT/man/geneinfo.Rd
TCGA2STAT/man/TumorNormalMatch.Rd
TCGA2STAT/man/OMICSBind.Rd