SampleSplit: Split the Data by Sample Types.
In TCGA2STAT: Simple TCGA Data Access for Integrated Statistical Analysis in R

Split the TCGA data into data matrices of different sample types (normal, tumor, or recurrent tumor).

1	SampleSplit(dat)

dat

data matrix in gene x sample format.

A list of three elements:

`primary.tumor`	a matrix of tumor samples of dimension gene x sample.
`recurrent.tumor`	a matrix of recurrent tumor samples of dimension gene x sample.
`normal`	a matrix from normal samples of dimension gene x sample.

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library(TCGA2STAT)
lusc.rnaseq2 <- getTCGA(disease="LUSC", data.type="RNASeq2")
lusc.rnaseq2.bytype <- SampleSplit(lusc.rnaseq2$dat)

TCGA2STAT documentation built on May 2, 2019, 6:49 a.m.

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