TumorNormalMatch: Get Matched Tumor and Normal Samples.
In TCGA2STAT: Simple TCGA Data Access for Integrated Statistical Analysis in R

Get data matrix of molecular profiles for matching tumor and normal samples.

1	TumorNormalMatch(dat)

dat

data matrix in gene x sample format.

This function returns a list of two gene-by-sample matrices. The samples in both matrices are of matching patients and are sorted at the same order.

A list of two elements:

`primary.tumor`	a matrix containing tumor samples; of dimension of gene x tumor samples.
`normal`	a matrix of normal samples; of dimension gene x normal samples.

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library(TCGA2STAT)
lusc.rnaseq2 <- getTCGA(disease="LUSC", data.type="RNASeq2")
lusc.rnaseq2.tum.norm <- TumorNormalMatch(lusc.rnaseq2$dat)

TCGA2STAT documentation built on May 2, 2019, 6:49 a.m.

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