TumorNormalMatch: Get Matched Tumor and Normal Samples.

Description Usage Arguments Details Value Examples

View source: R/TCGA2STAT.R

Description

Get data matrix of molecular profiles for matching tumor and normal samples.

Usage

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Arguments

dat

data matrix in gene x sample format.

Details

This function returns a list of two gene-by-sample matrices. The samples in both matrices are of matching patients and are sorted at the same order.

Value

A list of two elements:

primary.tumor

a matrix containing tumor samples; of dimension of gene x tumor samples.

normal

a matrix of normal samples; of dimension gene x normal samples.

Examples

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library(TCGA2STAT)
lusc.rnaseq2 <- getTCGA(disease="LUSC", data.type="RNASeq2")
lusc.rnaseq2.tum.norm <- TumorNormalMatch(lusc.rnaseq2$dat)

TCGA2STAT documentation built on May 29, 2017, 8:30 p.m.