Man pages for TCGAretriever
Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data

basic_tcga_queryTCGA Core Query Engine
expand_casesExplode TCGA Case Identifiers from a TCGA Study
fetch_all_tcgadataRecursively Fetch All Data Included in a TCGA Study Subset
get_cancer_studiesRetrieve a List of Cancer Studies Available at TCGA
get_cancer_typesRetrieve a List of Cancer Types as Defined by the TCGA...
get_case_listsRetrieve All Case List Available for a Specific TCGA Study
get_clinical_dataRetrieve Clinical Information from a TCGA Study
get_ext_mutationRetrieve Extended Information About DNA Mutations from TCGA
get_genetic_profilesRetrieve Genetic Profiles for a TCGA Study of Interest
get_profile_dataRetrieve TCGA Data corresponding to a Specific Genetic...
make_groupsSplit Numeric Vectors in Groups
show_headReturn a Subset of an Object
TCGAretriever-packageRetrieve Genomic and Clinical Data from CBioPortal
TCGAretriever documentation built on July 26, 2023, 5:51 p.m.