expand_cases: Explode TCGA Case Identifiers from a TCGA Study

In TCGAretriever: Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data

Explode TCGA Case Identifiers from a TCGA Study

Description

Each TCGA Study includes one or more "case lists". These are lists of sample/patient identifiers. All case lists of a study of interest are retrieved and the individual case identifiers are expanded and returned

Usage

expand_cases(csid = "mel_tsam_liang_2017")

Arguments

csid	string corresponding to a TCGA Cancer Study identifier

Value

list containing as many elements as TCGA case lists available for a given TCGA Study. Each element is a list containing two elements:

• a string corresponding to the Id of the case list as defined by TCGA

• character vector including all case IDs corresponding to the case list

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/TCGAretriever/

Examples

expand_cases("mel_tsam_liang_2017")

TCGAretriever documentation built on July 26, 2023, 5:51 p.m.