get_case_lists: Retrieve All Case List Available for a Specific TCGA Study

Description Usage Arguments Value Author(s) References Examples

View source: R/TCGAretr_scr.R

Description

TCGA keeps track of which samples were analyzed by which technique within a given Study. Sample identifiers are organized in lists of cases (samples/patients) and are associated with a case_list identifier. The function retrieves information about the case lists available for a given TCGA Study.

Usage

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Arguments

csid

String corresponding to the Identifier of the TCGA Study of Interest

Value

Data Frame including one row per case_list and five columns

Author(s)

Damiano Fantini, damiano.fantini@gmail.com

References

Examples

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all_case_lists <- get_case_lists("blca_tcga")
if(ncol(all_case_lists) >= 3) {
  all_case_lists[,1:3]
}

TCGAretriever documentation built on Jan. 11, 2020, 9:43 a.m.