get_case_lists: Retrieve All Case List Available for a Specific TCGA Study

In TCGAretriever: Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data

Retrieve All Case List Available for a Specific TCGA Study

Description

TCGA keeps track of which samples were analyzed by which technique within a given Study. Sample identifiers are organized in lists of cases (samples/patients) and are associated with a case_list identifier. The function retrieves information about the case lists available for a given TCGA Study.

Usage

get_case_lists(csid = "blca_tcga")

Arguments

csid	String corresponding to the Identifier of the TCGA Study of Interest

Value

Data Frame including one row per case_list and five columns

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/TCGAretriever/

Examples

blca_case_lists <- get_case_lists("blca_tcga")
blca_case_lists

TCGAretriever documentation built on July 26, 2023, 5:51 p.m.