Simulation of reconstructed phylogenetic trees under treewide timeheterogeneous birthdeath processes and estimation of diversification parameters under the same model. Speciation and extinction rates can be any function of time and massextinction events at specific times can be provided. Trees can be simulated either conditioned on the number of species, the time of the process, or both. Additionally, the likelihood equations are implemented for convenience and can be used for Maximum Likelihood (ML) estimation and Bayesian inference.
Package details 


Author  Sebastian Hoehna and Michael R. May 
Date of publication  20151028 08:44:56 
Maintainer  Sebastian Hoehna <Sebastian.Hoehna@gmail.com> 
License  GPL3 
Version  2.1.0 
Package repository  View on CRAN 
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