TESS: Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events
Version 2.1.0

Simulation of reconstructed phylogenetic trees under tree-wide time-heterogeneous birth-death processes and estimation of diversification parameters under the same model. Speciation and extinction rates can be any function of time and mass-extinction events at specific times can be provided. Trees can be simulated either conditioned on the number of species, the time of the process, or both. Additionally, the likelihood equations are implemented for convenience and can be used for Maximum Likelihood (ML) estimation and Bayesian inference.

Package details

AuthorSebastian Hoehna and Michael R. May
Date of publication2015-10-28 08:44:56
MaintainerSebastian Hoehna <Sebastian.Hoehna@gmail.com>
LicenseGPL-3
Version2.1.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("TESS")

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TESS documentation built on May 29, 2017, 7:17 p.m.