Man pages for TESS
Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events

cettiidaeCettiidae phylogeny from Alstroem et al. (2011)
conifersConifer phylogeny from Leslie et al. (2012)
mammaliaDated family level mammalian phylogeny from Meredith et al....
tess.analysistess.analysis: Diversification rate estimation under an...
tess.likelihoodtess.likelihood: Probability density of a tree under a...
tess.likelihood.rateshifttess.likelihood.rateshift: Probability density of a tree...
tess.mcmctess.mcmc: Markov chain Monte Carlo simulation using a...
tess.nTaxa.expectedtess.nTaxa.expected: The expected number of taxa at present...
TESS-packageDiversification rate estimation and fast simulation of...
tess.pathSamplingtess.pathSampling: Marginal likelihood estimation via...
tess.plot.multichain.diagnosticstess.plot.multichain.diagnostics: Plotting the mcmc...
tess.plot.outputtess.plot.output: Plotting the output of a diversification...
tess.plot.singlechain.diagnosticstess.plot.mcmc.diagnostics: Plotting the single chain mcmc...
tess.PosteriorPredictiontess.PosteriorPrediction: Approximation of the posterior...
tess.PosteriorPredictiveTesttess.PosteriorPredictiveTest: Approximation of the posterior...
tess.process.outputtess.process.output: Summarizing the output of a...
tess.sim.agetess.sim.age: Simulate a reconstructed tree for a given age...
tess.sim.taxatess.sim.taxa.taxa: Simulate a reconstructed tree for a given...
tess.sim.taxa.agetess.sim.taxa.taxa.age: Simulate a reconstructed tree for a...
tess.steppingStoneSamplingtess.steppingStoneSampling: Marginal likelihood estimation...
TESS documentation built on May 29, 2017, 7:17 p.m.