AAToInt: AA, DNA, RNA character set
In TKF: Pairwise Distance Estimation with TKF91 and TKF92 Model
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Some AA, DNA, RNA character set defined in this package and
functions to convert them into integers.
Usage
1
AAToInt(AA)
Arguments
AA
A vector of character.
Details
Each AA is converted to the position of that AA in AACharacterSet.
Value
A integer vector.
Author(s)
Ge Tan
Examples
1
2
3
4
5
6
7
library(seqinr)
fasta <- read.fasta(file.path(system.file("extdata", package="TKF"),
"pair1.fasta"),
seqtype="AA", set.attributes=FALSE)
AAToInt(fasta[[1]])
AACharacterSet
TKF documentation built on May 2, 2019, 7:59 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Some AA, DNA, RNA character set defined in this package and functions to convert them into integers.
Usage
1 | AAToInt(AA)
|
Arguments
AA |
A vector of character. |
Details
Each AA is converted to the position of that AA in AACharacterSet.
Value
A integer vector.
Author(s)
Ge Tan
Examples
1 2 3 4 5 6 7 | library(seqinr)
fasta <- read.fasta(file.path(system.file("extdata", package="TKF"),
"pair1.fasta"),
seqtype="AA", set.attributes=FALSE)
AAToInt(fasta[[1]])
AACharacterSet
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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