viewpathway: The visualization of interested pathway based on the genes...

In TPEA: A Novel Topology-Based Pathway Enrichment Analysis Approach

Description

Input the number of the interested pathway in KEGG Database and genes you interested in, such as differentially expressed genes.

Usage

viewpathway(pathwayID, DEGs)

Arguments

pathwayID	The number of interested pathway ID in KEGG Database, such as "hsa05210".
DEGs	The genes you interested in, such as differentially expressed genes.

Details

The "DEGs" must be Entrez ID. If not, please translate them into Entrez ID.

Value

The interface link to KEGG Database to visualize the pathway you input.

Author(s)

Wei Jiang

Examples

DEGs<-c(836,842,5594,595);
DEG<-as.data.frame(DEGs);
pathwayID<-"hsa05210";
viewpathway(pathwayID,DEG);

TPEA documentation built on May 1, 2019, 8:13 p.m.