TR8: A Tool for Downloading Functional Traits Data for Plant Species

Plant ecologists often need to collect "traits" data about plant species which are often scattered among various databases: TR8 contains a set of tools which take care of automatically retrieving some of those functional traits data for plant species from publicly available databases (Biolflor, The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT, PLANTS, Jepson Flora Project). The TR8 name, inspired by "car plates" jokes, was chosen since it both reminds of the main object of the package and is extremely short to type.

AuthorGionata Bocci <boccigionata@gmail.com>
Date of publication2016-12-14 17:23:22
MaintainerGionata Bocci <boccigionata@gmail.com>
LicenseGPL (>= 2)
Version0.9.15
https://github.com/GioBo/TR8

View on CRAN

Files in this package

TR8
TR8/inst
TR8/inst/CITATION
TR8/inst/COPYRIGHTS
TR8/inst/doc
TR8/inst/doc/Expanding_TR8.R
TR8/inst/doc/Expanding_TR8.Rnw
TR8/inst/doc/TR8.Rnw
TR8/inst/doc/TR8_workflow.pdf
TR8/inst/doc/TR8.pdf
TR8/inst/doc/Expanding_TR8.pdf
TR8/inst/doc/TR8_workflow.R
TR8/inst/doc/TR8.R
TR8/inst/doc/TR8_workflow.Rnw
TR8/tests
TR8/tests/testthat
TR8/tests/testthat/test_tr8results
TR8/tests/testthat/test_tr8results.R
TR8/NAMESPACE
TR8/NEWS
TR8/data
TR8/data/leda_lookup.rda
TR8/data/pignatti.rda
TR8/data/imkerbond_data.rda
TR8/data/biolflor_lookup.rda
TR8/data/traits_Biolflor.rda
TR8/data/traits_eco.rda
TR8/data/available_tr8.rda
TR8/data/column_list.rda
TR8/data/ref_PLANTS.rda
TR8/R
TR8/R/leda_download.R TR8/R/Pignatti.R TR8/R/results.R TR8/R/clean_table.R TR8/R/mycoflor.R TR8/R/ecoflora.R TR8/R/tr8_cleanup_cols.R TR8/R/create_brico_ref.R TR8/R/imkerbond.R TR8/R/catminat_download.R TR8/R/tr8.R TR8/R/control.R TR8/R/LEDA.R TR8/R/catminat.R TR8/R/biolflor.R TR8/R/brot_data.R TR8/R/myco.R TR8/R/available_traits.R TR8/R/PLANTS.R TR8/R/tr8_setup.R TR8/R/PLANTS_download.R TR8/R/local_storage.R TR8/R/generate_biolflor_lu.R TR8/R/leda_general.R TR8/R/ecoflora_download_url.R TR8/R/flowering_italy.R TR8/R/TR8-package.R TR8/R/eflora.R TR8/R/zzz.R TR8/R/tr8_gui.R
TR8/vignettes
TR8/vignettes/le_mass.png
TR8/vignettes/li_form.png
TR8/vignettes/rlq_tr8.pdf
TR8/vignettes/strategy.png
TR8/vignettes/Expanding_TR8.Rnw
TR8/vignettes/rlq_tr8.png
TR8/vignettes/TR8.Rnw
TR8/vignettes/cluster_cut.pdf
TR8/vignettes/funct_groups.png
TR8/vignettes/le_area.png
TR8/vignettes/cluster_cut.png
TR8/vignettes/auto
TR8/vignettes/auto/TR8.el
TR8/vignettes/cluster.png
TR8/vignettes/tr8.bib
TR8/vignettes/h_max.png
TR8/vignettes/temp.ps
TR8/vignettes/TR8_workflow.Rnw
TR8/vignettes/Traits_groups.png
TR8/MD5
TR8/build
TR8/build/vignette.rds
TR8/DESCRIPTION
TR8/man
TR8/man/TR8-package.Rd TR8/man/ref_PLANTS.Rd TR8/man/local_storage.Rd TR8/man/tr8_config.Rd TR8/man/tr8_setup.Rd TR8/man/traits_pollen_Biolflor.Rd TR8/man/imkerbond_check.Rd TR8/man/biolflor_lookup.Rd TR8/man/Tr8-class.Rd TR8/man/column_list.Rd TR8/man/tr8.Rd TR8/man/leda_lookup.Rd TR8/man/traits_special_Biolflor.Rd TR8/man/available_tr8.Rd TR8/man/leda_download_to_local_directory.Rd TR8/man/pignatti.Rd TR8/man/available_traits.Rd TR8/man/traits_eco.Rd TR8/man/list_of_traits_Biolflor.Rd TR8/man/ECOFLORA_df.Rd

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