Nothing
test_that("ctSweepS runs and returns valid output", {
data("sample_data", package = "TSQCA")
dat <- sample_data
res <- ctSweepS(
dat = dat,
Yvar = "Y",
Xvars = c("X1", "X2", "X3"),
sweep_var = "X3",
sweep_range = 6:8,
thrY = 7,
thrX_default = 7,
return_details = FALSE
)
# 1. Output must be a data frame
expect_s3_class(res, "data.frame")
# 2. Must contain at least one row
expect_true(nrow(res) > 0)
# 3. Core columns must exist
required_cols <- c("expression", "inclS", "covS")
expect_true(all(required_cols %in% colnames(res)))
# 4. Must include at least one threshold-related column
thr_cols <- grep("thr|threshold", colnames(res), ignore.case = TRUE, value = TRUE)
expect_true(length(thr_cols) >= 1)
})
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