TaxaNorm-package: TaxaNorm: Feature-Wise Normalization for Microbiome...

In TaxaNorm: Feature-Wise Normalization for Microbiome Sequencing Data

TaxaNorm: Feature-Wise Normalization for Microbiome Sequencing Data

Description

A novel feature-wise normalization method based on a zero-inflated negative binomial model. This method assumes that the effects of sequencing depth vary for each taxon on their mean and also incorporates a rational link of zero probability and taxon dispersion as a function of sequencing depth. Ziyue Wang, Dillon Lloyd, Shanshan Zhao, Alison Motsinger-Reif (2023) <arXiv:https://www.biorxiv.org/content/10.1101/2023.10.31.563648v1.abstract>.

Author(s)

Maintainer: Dillon Lloyd [e-mail] [copyright holder]

Authors:

• Ziyue Wang [e-mail]

• Shanshan Zhao [e-mail] [contributor]

• Alison Motsinger-Reif [e-mail] [contributor]

See Also

Useful links:

• https://github.com/wangziyue57/TaxaNorm

• Report bugs at https://github.com/wangziyue57/TaxaNorm/issues

TaxaNorm documentation built on June 24, 2024, 5:15 p.m.