TaxaNorm_Model_Parameters-class: TaxaNorm_Model_Parameters

In TaxaNorm: Feature-Wise Normalization for Microbiome Sequencing Data

TaxaNorm_Model_Parameters

Description

S4 class to store TaxaNorm Parameters

Usage

TaxaNorm_Model_Parameters(coefficients, mu, theta, pi)

## S4 method for signature 'TaxaNorm_Model_Parameters'
coefficients(x)

## S4 replacement method for signature 'TaxaNorm_Model_Parameters'
coefficients(x) <- value

## S4 method for signature 'TaxaNorm_Model_Parameters'
mu(x)

## S4 replacement method for signature 'TaxaNorm_Model_Parameters'
mu(x) <- value

## S4 method for signature 'TaxaNorm_Model_Parameters'
theta(x)

## S4 replacement method for signature 'TaxaNorm_Model_Parameters'
theta(x) <- value

## S4 method for signature 'TaxaNorm_Model_Parameters'
pi(x)

## S4 replacement method for signature 'TaxaNorm_Model_Parameters'
pi(x) <- value

Arguments

coefficients	Passed to coefficients slot
mu	Passed to mu slot
theta	Passed to theta slot
pi	Passed to pi slot
x	TaxaNorm_Model_Parameters object
value	Replacement value

Details

Parameters for TaxaNorm Method

Functions

• coefficients(TaxaNorm_Model_Parameters): Return coefficients slot

• mu(TaxaNorm_Model_Parameters): Return mu slot

• theta(TaxaNorm_Model_Parameters): Return theta slot

• pi(TaxaNorm_Model_Parameters): Return pi slot

Slots

coefficients

matrix coefficients

mu

matrix mu

theta

matrix theta

pi

matrix pi

Examples

coefficients <-  matrix(c(1,2,3,4,5,6,7,8,9),nrow=3,ncol=3,byrow=TRUE)
mu <- matrix(c(1,2,3,4,5,6,7,8,9),nrow=3,ncol=3,byrow=TRUE)
theta <-  matrix(c(1,2,3,4,5,6,7,8,9),nrow=3,ncol=3,byrow=TRUE)
pi <- matrix(c(1,2,3,4,5,6,7,8,9),nrow=3,ncol=3,byrow=TRUE)
TaxaNorm_Model_Parameters(coefficients = coefficients,mu = mu,theta = theta,pi = pi)

TaxaNorm documentation built on June 24, 2024, 5:15 p.m.