TipDatingBeast: Using Tip Dates with Phylogenetic Trees in BEAST (Software for Phylogenetic Analysis)
Version 1.0-5

Assist performing tip-dating of phylogenetic trees with BEAST.

Browse man pages Browse package API and functions Browse package files

AuthorAdrien Rieux, Camilo Khatchikian
Date of publication2016-09-05 20:19:34
MaintainerCamilo Khatchikian <ckhatchikian@gmail.com>
LicenseGPL (>= 2)
Version1.0-5
URL http://www.r-project.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("TipDatingBeast")

Man pages

clusters.Flu: Cluster structure example input file for the RandomCluster...
Flu_BEAST_18: Example BEAST 1 input file
Flu_BEAST_232: Example BEAST 2 input file
ListTaxa: List taxa names present in the BEAST input file
PlotDRT: List taxa names present in the BEAST input file
PlotLOOCV: List taxa names present in the BEAST input file
RandomCluster: randomize dates among tips in the BEAST input file
RandomDates: randomize dates among tips in the BEAST input file
TaxaOut: generates input files for leave-one-out analyses in BEAST
TaxonOut: single Taxon out input file for leave-one-out analysis in...
TipDatingBeast-package: Tip dating of phylogenetic trees with BEAST

Functions

Flu_BEAST_18 Man page
Flu_BEAST_232 Man page
LISTTAXA Man page
ListTaxa Man page Source code
PLOTDRT Man page
PLOTLOOCV Man page
PlotDRT Man page Source code
PlotLOOCV Man page Source code
RANDOMCLUSTER Man page
RANDOMDATES Man page
RandomCluster Man page Source code
RandomDates Man page Source code
TAXAOUT Man page
TAXONOUT Man page
TaxaOut Man page Source code
TaxonOut Man page Source code
TipDatingBeast Man page
TipDatingBeast-package Man page
clusters.Flu.csv Man page

Files

inst
inst/example
inst/example/Flu_BEAST_18.xml
inst/example/Flu_BEAST_232.xml
inst/example/Flu_BEAST_18.clusters.csv
inst/example/Tutorial_TipDatingBEAST_Sept2016.pdf
inst/example/Flu_BEAST_232.clusters.csv
NAMESPACE
R
R/ListTaxa.R
R/TaxonOut.R
R/Plot_LOOCV.R
R/Plot_DRT.R
R/TaxaOut.R
R/RandomCluster.R
R/RandomDates.R
MD5
DESCRIPTION
man
man/TaxonOut.Rd
man/PlotDRT.Rd
man/TaxaOut.Rd
man/RandomDates.Rd
man/TipDatingBeast-package.Rd
man/clusters.Flu.Rd
man/PlotLOOCV.Rd
man/Flu_BEAST_18.Rd
man/ListTaxa.Rd
man/RandomCluster.Rd
man/Flu_BEAST_232.Rd
TipDatingBeast documentation built on May 20, 2017, 1:20 a.m.