TipDatingBeast: Using Tip Dates with Phylogenetic Trees in BEAST (Software for Phylogenetic Analysis)

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Assist performing tip-dating of phylogenetic trees with BEAST.

Author
Adrien Rieux, Camilo Khatchikian
Date of publication
2016-09-05 20:19:34
Maintainer
Camilo Khatchikian <ckhatchikian@gmail.com>
License
GPL (>= 2)
Version
1.0-5
URLs

View on CRAN

Man pages

clusters.Flu
Cluster structure example input file for the RandomCluster...
Flu_BEAST_18
Example BEAST 1 input file
Flu_BEAST_232
Example BEAST 2 input file
ListTaxa
List taxa names present in the BEAST input file
PlotDRT
List taxa names present in the BEAST input file
PlotLOOCV
List taxa names present in the BEAST input file
RandomCluster
randomize dates among tips in the BEAST input file
RandomDates
randomize dates among tips in the BEAST input file
TaxaOut
generates input files for leave-one-out analyses in BEAST
TaxonOut
single Taxon out input file for leave-one-out analysis in...
TipDatingBeast-package
Tip dating of phylogenetic trees with BEAST

Files in this package

TipDatingBeast
TipDatingBeast/inst
TipDatingBeast/inst/example
TipDatingBeast/inst/example/Flu_BEAST_18.xml
TipDatingBeast/inst/example/Flu_BEAST_232.xml
TipDatingBeast/inst/example/Flu_BEAST_18.clusters.csv
TipDatingBeast/inst/example/Tutorial_TipDatingBEAST_Sept2016.pdf
TipDatingBeast/inst/example/Flu_BEAST_232.clusters.csv
TipDatingBeast/NAMESPACE
TipDatingBeast/R
TipDatingBeast/R/ListTaxa.R
TipDatingBeast/R/TaxonOut.R
TipDatingBeast/R/Plot_LOOCV.R
TipDatingBeast/R/Plot_DRT.R
TipDatingBeast/R/TaxaOut.R
TipDatingBeast/R/RandomCluster.R
TipDatingBeast/R/RandomDates.R
TipDatingBeast/MD5
TipDatingBeast/DESCRIPTION
TipDatingBeast/man
TipDatingBeast/man/TaxonOut.Rd
TipDatingBeast/man/PlotDRT.Rd
TipDatingBeast/man/TaxaOut.Rd
TipDatingBeast/man/RandomDates.Rd
TipDatingBeast/man/TipDatingBeast-package.Rd
TipDatingBeast/man/clusters.Flu.Rd
TipDatingBeast/man/PlotLOOCV.Rd
TipDatingBeast/man/Flu_BEAST_18.Rd
TipDatingBeast/man/ListTaxa.Rd
TipDatingBeast/man/RandomCluster.Rd
TipDatingBeast/man/Flu_BEAST_232.Rd