TipDatingBeast-package: Tip dating of phylogenetic trees with BEAST
In TipDatingBeast: Using Tip Dates with Phylogenetic Trees in BEAST
Description
Details
Author(s)
References
Description
Assist performing tip-dating of phylogenetic trees with BEAST. Main functions include
randomization of dates among tips and producing new input files with such randomization
and generating input files for leave-one-out analyses using BEAST software.
Details
Package: TipDatingBeast
Type: Package
Version: 1.1.0
Date: 2018-08-05
License: GPL (>= 2)
The RandomDates function randomize tip dates.
The RandomCluster function ramdomize tip dates between group of tips.
The TaxaOut function generates input files for leave-one-analysis.
The TaxonOut function generates a single input file by removing the date of a particular taxon.
The ListTaxa function displays the names and order of the taxa in the xml file.
The PlotDRT function plots BEAST output of ramdomize tip dates analysis.
The PlotLOOCV function plots BEAST output of leave-one-analysis.
Author(s)
Rieux A & Khatchikian, C.
Maintainer: C. Khatchikian <ckhatchikian@gmail.com>
References
Rieux, A. and Khatchikian, C.E., 2017. TipDatingBeast: An R package to assist the implementation of
phylogenetic tip-dating tests using BEAST. Molecular ecology resources, 17(4), pp.608-613.
Drummond AJ, Suchard MA, Xie D & Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7.
Molecular Biology And Evolution 29: 1969-1973.
TipDatingBeast documentation built on Oct. 30, 2019, 11:40 a.m.
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Description Details Author(s) References
Description
Assist performing tip-dating of phylogenetic trees with BEAST. Main functions include randomization of dates among tips and producing new input files with such randomization and generating input files for leave-one-out analyses using BEAST software.
Details
| Package: | TipDatingBeast |
| Type: | Package |
| Version: | 1.1.0 |
| Date: | 2018-08-05 |
| License: | GPL (>= 2) |
The RandomDates function randomize tip dates. The RandomCluster function ramdomize tip dates between group of tips. The TaxaOut function generates input files for leave-one-analysis. The TaxonOut function generates a single input file by removing the date of a particular taxon. The ListTaxa function displays the names and order of the taxa in the xml file. The PlotDRT function plots BEAST output of ramdomize tip dates analysis. The PlotLOOCV function plots BEAST output of leave-one-analysis.
Author(s)
Rieux A & Khatchikian, C. Maintainer: C. Khatchikian <ckhatchikian@gmail.com>
References
Rieux, A. and Khatchikian, C.E., 2017. TipDatingBeast: An R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular ecology resources, 17(4), pp.608-613. Drummond AJ, Suchard MA, Xie D & Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology And Evolution 29: 1969-1973.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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