List taxa names present in the BEAST input file

Description

This function list the taxa names present in an input xml file for the BEAST version 1 software. The function is intended to help using the function "TaxonOut" as it allows the identification of the order of each taxa present in the input file.

Usage

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Arguments

name

Name of the input file should be a .xml file generated using BEAUTi. Quote the name ("example"). Do not included .xml.

Details

The function works only with a .xml file generated with BEAUti

Value

The function returns the names and order of the taxa present in an input xml file for the BEAST software.

References

Rieux A & Khatchikian, C. Unpublished. Drummond AJ, Suchard MA, Xie D & Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology And Evolution 29: 1969-1973.

Examples

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## Not run: 
    # using the example files "Flu-BEAST-1.8.xml" found in example folder.
	# example file can be found in the example folder
	ListTaxa("Flu-BEAST-1.8")
	# list all 21 taxa in the file in the console 

## End(Not run)