API for ToxicoGx
Analysis of Large-Scale Toxico-Genomic Data

Global functions
.GetSupportVec	Source code
.Hill	Source code
.ToxicoSet	Man page
.calculateFromRaw	Source code
.checkParamsForErrors	Source code
.checkParamsForMissing	Source code
.checkParamsForMissingTests	Source code
.computeAUCUnderFittedCurve	Source code
.createtSetEntry	Source code
.dmedncauchys	Source code
.dmednnormals	Source code
.edmedncauchys	Source code
.edmednnormals	Source code
.getCommonConcentrationRange	Source code
.meshEval	Source code
.multinom	Source code Source code
.onAttach	Source code
.optimizeRegression	Source code
.pmedncauchys	Source code
.pmednnormals	Source code
.residual	Source code
.rmedncauchys	Source code
.rmednnormals	Source code
.saveTSetAsGroundTruth	Man page Source code
.summarizePerturbationNumbers	Source code
.summarizeSensitivityNumbers	Source code
HCC_sig	Man page
TGGATESsmall	Man page
ToxicoSet	Man page Source code
ToxicoSet-class	Man page
ToxicoSig	Man page Source code
[,ToxicoSet,ANY,ANY,ANY-method	Man page
availableTSets	Man page Source code
cSetName,ToxicoSet-method	Man page
cellInfo,ToxicoSet-method	Man page
cellInfo<-,ToxicoSet,data.frame-method	Man page
cellNames,ToxicoSet-method	Man page
cellNames<-,ToxicoSet,character-method	Man page
checkTSetStructure	Man page Source code
columnsAsCharacter	Source code
computeAUC	Man page
computeIC50	Man page Source code
computeICn	Man page Source code
dateCreated,ToxicoSet-method	Man page
dim,ToxicoSet-method	Man page
downloadTSet	Man page Source code
drugGeneResponseCurve	Man page Source code
drugInfo	Man page
drugInfo,ToxicoSet-method	Man page
drugInfo<-	Man page
drugInfo<-,ToxicoSet,data.frame-method	Man page
drugNames	Man page
drugNames,ToxicoSet-method	Man page
drugNames<-	Man page
drugNames<-,ToxicoSet,character-method	Man page
drugPerturbationSig	Man page Source code
drugTimeResponseCurve	Man page Source code
fNames,ToxicoSet,character-method	Man page
featureInfo,ToxicoSet,character-method	Man page
featureInfo<-,ToxicoSet,character,data.frame-method	Man page
geneDrugPerturbation	Man page Source code
geneDrugSensitivity	Source code
logLogisticRegression	Man page Source code
mDataNames,ToxicoSet-method	Man page
molecularProfiles,ToxicoSet,character-method	Man page
molecularProfiles<-,ToxicoSet,character,matrix-method	Man page
msg_verbose	Man page Source code
names,ToxicoSet-method	Man page
paramErrorChecker	Source code
paramMissingHandler	Source code
paramMissingHandlerTests	Source code
pertNumber,ToxicoSet-method	Man page
pertNumber<-,ToxicoSet,array-method	Man page
pharmacoSettoToxicoSet	Man page Source code
phenoInfo,ToxicoSet,character-method	Man page
phenoInfo<-,ToxicoSet,character,data.frame-method	Man page
rankGeneDrugPerturbation	Man page Source code
sanitizeInput	Source code
sensNumber,ToxicoSet-method	Man page
sensNumber<-,ToxicoSet,matrix-method	Man page
sensitivityInfo,ToxicoSet-method	Man page
sensitivityInfo<-,ToxicoSet,data.frame-method	Man page
sensitivityMeasures,ToxicoSet-method	Man page
sensitivityProfiles,ToxicoSet-method	Man page
sensitivityProfiles<-,ToxicoSet,data.frame-method	Man page
sensitivityProfiles<-,ToxicoSet,matrix-method	Man page
show,ToxicoSet-method	Man page
show,ToxicoSig-method	Man page
showSigAnnot	Man page Source code
subsetTo	Man page Source code
summarizeMolecularProfiles	Man page Source code
summarizeSensitivityProfiles	Man page Source code
updateCellId	Man page Source code
updateDrugId	Man page Source code
updateMaxConc	Source code
warn_verbose	Man page Source code