Files in ToxicoGx

Analysis of Large-Scale Toxico-Genomic Data

NEWS.md

MD5

README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/datalist

data/HCC_sig.rda

data/TGGATESsmall.rda

R/geneDrugSensitivity.R R/paramErrorChecker.R R/rankGeneDrugSensitivity.R R/computeICn.R R/ToxicoSet.R R/drugPerturbationSig.R R/globals.R R/downloadTSet.R R/as_tSet.R R/theoreticalFit.R R/LogLogisticRegression.R R/dataset.R R/saveTSetAsGroundTruth.R R/dmednnormals.R R/drugGeneResponseCurve.R R/SanityCheck.R R/computeAUC.R R/columnsAsCharacter.R R/utilityFunctions.R R/zzz.R R/paramMissingHandler.R R/summarizeMolecularProfiles.R R/signatureClass.R R/paramMissingHandlerTests.R R/computeDrugSensitivity.R R/dmedncauchys.R R/summarizeSensitivityProfiles.R R/computeIC50.R R/geneDrugPerturbation.R R/rankGeneDrugPerturbation.R R/drugTimeResponseCurve.R

vignettes/header.tex

vignettes/manuscript.latex

vignettes/ecology.csl

vignettes/toxicoGxCaseStudies.Rmd

vignettes/CS1_published.png

man/pharmacoSettoToxicoSet.Rd man/dot-saveTSetAsGroundTruth.Rd man/sub-ToxicoSet-ANY-ANY-ANY-method.Rd man/updateCellId.Rd man/drugPerturbationSig.Rd man/ToxicoSet-class.Rd man/HCC_sig.Rd man/names-ToxicoSet-method.Rd man/ToxicoSet.Rd man/drugInfo-set.Rd man/drugNames.Rd man/computeICn.Rd man/availableTSets.Rd man/geneDrugPerturbation.Rd man/TGGATESsmall.Rd man/showSigAnnot.Rd man/summarizeSensitivityProfiles.Rd man/rankGeneDrugPerturbation.Rd man/msg_verbose.Rd man/checkTSetStructure.Rd man/computeAUC.Rd man/downloadTSet.Rd man/drugInfo.Rd man/dim-ToxicoSet-method.Rd man/summarizeMolecularProfiles.Rd man/show-ToxicoSig-method.Rd man/drugGeneResponseCurve.Rd man/warn_verbose.Rd man/drugTimeResponseCurve.Rd man/mDataNames-ToxicoSet-method.Rd man/drugNames-set.Rd man/subsetTo.Rd man/show-ToxicoSet-method.Rd man/ToxicoSig.Rd man/updateDrugId.Rd man/logLogisticRegression.Rd inst/doc/toxicoGxCaseStudies.R inst/doc/toxicoGxCaseStudies.pdf inst/doc/toxicoGxCaseStudies.Rmd

ToxicoGx documentation built on Jan. 20, 2020, 5:06 p.m.