geneDrugPerturbation: Compute gene-drug associations
In ToxicoGx: Analysis of Large-Scale Toxico-Genomic Data

Function computing gene-drug associations from perturbation data

1	geneDrugPerturbation(x, concentration, type, batch, duration, model = FALSE)

`x`	[numeric] Vector of gene expression values
`concentration`	[numeric] Vector with drug concentrations/doses
`type`	[factor] Vector of factors specifying the cell lines or type types
`batch`	[factor] Vector of factors specifying the batch
`duration`	[character] Vector of measurement times (in hours)
`model`	[logical] Should the full linear model be returned? Default set to FALSE

[numeric] Vector reporting the effect size (estimateof the coefficient of drug concentration), standard error (se), sample size (n), t statistic, and F statistics and its corresponding p-value

ToxicoGx documentation built on Jan. 20, 2020, 5:06 p.m.